PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18294.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 983aa MW: 108729 Da PI: 7.6446

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	138	215	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls k+yhrrhkvC vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ PHU18294.1 138 ICQVQDCQVDLSMSKDYHRRHKVCGVHSKAAQALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 215 5**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence
MEARDFHGPV VSKLEFGGGK KAGEWDLNDW VWDGDRFTVA PLNKEIPVVP VTTGISDVFS 60 SQRSDELTLG KGKEMEKRRR TIVIEDDDDD GQNGGEDGLL NLKLGEQLYP VMEGEGEKWE 120 GKSGKKAKIG GVSSNRTICQ VQDCQVDLSM SKDYHRRHKV CGVHSKAAQA LVGNVMQRFC 180 QQCSRFHVLE EFDEGKRSCR RRLAGHNKRR RKTNPENVAN GASMNDEGGN NYLLVSLLRI 240 LANVQFNSSD QAKDQDLLSY LLRNLASLAG ANNERNVSGL LPAPSGPQNA WTSMGAPKEV 300 SLSPNGNCST IPASEVTEKR IGSTSDAERG ISRNPCAAQP GSVCCRKESL PINTNASATT 360 SAPLKLNIDL NNIYDDSQVD IQKLQNSVAF ANAGAASSAC PPLISHDPHK SSSTRTSWNS 420 GSTSSLSPSS SSGEAQSRTD RIVFKLFGKD PGELPPALRK QILDWLSHSP SNIESYIRPG 480 CIILTIYLRM DKSTWEKLYC DLNSSLRKLL NASTCSFWHT GWVYTRVNDR VAFLYNGQVV 540 LDTSLPIRSH GSCGISIIKP IAVCASESVQ FLVKGFNLSR PTTRLLCALE GKYLVQGNCI 600 DMMMEGADSC MDHEEIQSVS VPCIVPNVTG RGFIEVEDHG LSSNFFPFIV AEKDVCSEIR 660 TLESIIEFAK MTDGFLQGTQ EFQARDQALD FLHELGWLLH RNHLKFRVDS GADLNPFTFQ 720 RFKWLIDFSV DHDWCAVVKK LLDVFFNGAV DVGQESSLDV PLREVGLLHR AVRRKCRAMV 780 DVLLKYRHRG AFDLSGLQKQ QDDRGYLFRP DAVGPGGLTP LHVVASLAGC ENLLNALIDD 840 PGQVGIEAWK SARDSTGLTP NDYACLRGHY SYVHMVQKKI NEKPDDGHVV LDIPGSYGHK 900 SVKIASFQTE KSLEKPIHRQ CKQCKQILSY RNSGTSLIYK PAMLSVVGIA VICVCVALLF 960 KSLPDVHYSF RPFRWDLLKY GSI

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence

MEARDFHGPV VSKLEFGGGK KAGEWDLNDW VWDGDRFTVA PLNKEIPVVP VTTGISDVFS  60
SQRSDELTLG KGKEMEKRRR TIVIEDDDDD GQNGGEDGLL NLKLGEQLYP VMEGEGEKWE  120
GKSGKKAKIG GVSSNRTICQ VQDCQVDLSM SKDYHRRHKV CGVHSKAAQA LVGNVMQRFC  180
QQCSRFHVLE EFDEGKRSCR RRLAGHNKRR RKTNPENVAN GASMNDEGGN NYLLVSLLRI  240
LANVQFNSSD QAKDQDLLSY LLRNLASLAG ANNERNVSGL LPAPSGPQNA WTSMGAPKEV  300
SLSPNGNCST IPASEVTEKR IGSTSDAERG ISRNPCAAQP GSVCCRKESL PINTNASATT  360
SAPLKLNIDL NNIYDDSQVD IQKLQNSVAF ANAGAASSAC PPLISHDPHK SSSTRTSWNS  420
GSTSSLSPSS SSGEAQSRTD RIVFKLFGKD PGELPPALRK QILDWLSHSP SNIESYIRPG  480
CIILTIYLRM DKSTWEKLYC DLNSSLRKLL NASTCSFWHT GWVYTRVNDR VAFLYNGQVV  540
LDTSLPIRSH GSCGISIIKP IAVCASESVQ FLVKGFNLSR PTTRLLCALE GKYLVQGNCI  600
DMMMEGADSC MDHEEIQSVS VPCIVPNVTG RGFIEVEDHG LSSNFFPFIV AEKDVCSEIR  660
TLESIIEFAK MTDGFLQGTQ EFQARDQALD FLHELGWLLH RNHLKFRVDS GADLNPFTFQ  720
RFKWLIDFSV DHDWCAVVKK LLDVFFNGAV DVGQESSLDV PLREVGLLHR AVRRKCRAMV  780
DVLLKYRHRG AFDLSGLQKQ QDDRGYLFRP DAVGPGGLTP LHVVASLAGC ENLLNALIDD  840
PGQVGIEAWK SARDSTGLTP NDYACLRGHY SYVHMVQKKI NEKPDDGHVV LDIPGSYGHK  900
SVKIASFQTE KSLEKPIHRQ CKQCKQILSY RNSGTSLIYK PAMLSVVGIA VICVCVALLF  960
KSLPDVHYSF RPFRWDLLKY GSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein