PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18217.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 398aa MW: 43400.3 Da PI: 5.1001

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.3e-15	77	122	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W+ eEd+ l +++ ++G ++W+ Ia+ ++ gR++k+c++rw + PHU18217.1 77 KEPWSREEDLVLMELIYKFGARNWSMIAQGIP-GRSGKSCRLRWCNQ 122 679***************************.*********985 PP
2	Myb_DNA-binding	56.8	5.1e-18	129	173	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ PHU18217.1 129 RKPFTDEEDRIIINAHAVHGNK-WASIAKLLP-GRTDNAIKNHWNST 173 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MNENAEKSNF SAVAVTAAVE NVSFEGGDAV LHGGGSEGNG GNASVDGNGG DDFVDDGGDV 60 EMSESGRGNR VSSGRVKEPW SREEDLVLME LIYKFGARNW SMIAQGIPGR SGKSCRLRWC 120 NQLDPLLKRK PFTDEEDRII INAHAVHGNK WASIAKLLPG RTDNAIKNHW NSTLRRRFAE 180 VWRVKPLCSV MLDDSIDNAK VLFEEIKSHG DFNQIKPLEM LEGSRAECMS SQSEDKTQIY 240 EIYDIPEKSP NFVSERSCST SVENSDPSAS RPTEKIGGFY VCNPSATSRI VPMQGPLIHT 300 FSPDFDICKL LEGCVSAGET TVPQGCGHGC CAASTNSSFK SSLLGPEFVE YEEHPPHLGH 360 ELASIATDLN NIAWIRSGLE KAGELRNSRH SSTQVGFG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MNENAEKSNF SAVAVTAAVE NVSFEGGDAV LHGGGSEGNG GNASVDGNGG DDFVDDGGDV  60
EMSESGRGNR VSSGRVKEPW SREEDLVLME LIYKFGARNW SMIAQGIPGR SGKSCRLRWC  120
NQLDPLLKRK PFTDEEDRII INAHAVHGNK WASIAKLLPG RTDNAIKNHW NSTLRRRFAE  180
VWRVKPLCSV MLDDSIDNAK VLFEEIKSHG DFNQIKPLEM LEGSRAECMS SQSEDKTQIY  240
EIYDIPEKSP NFVSERSCST SVENSDPSAS RPTEKIGGFY VCNPSATSRI VPMQGPLIHT  300
FSPDFDICKL LEGCVSAGET TVPQGCGHGC CAASTNSSFK SSLLGPEFVE YEEHPPHLGH  360
ELASIATDLN NIAWIRSGLE KAGELRNSRH SSTQVGFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-89	MYB family protein