PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17808.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 353aa MW: 41285.6 Da PI: 4.4587

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.5e-14	114	199	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ e+ +l+r++l++ +W ev++k+ + g+ +s ++C++ ++ l+k+ykk+ + ++k + +s++p+f++++ PHU17808.1 114 WSEEESFVLLEVWGERYLDLGRRSLRAEDWGEVAEKVtEMIGVDKSEIECRNQLDVLKKKYKKEITKMEKTGGGFHSKWPFFKKMD 199 ***********************************5568******************99999988899999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MIVVNMNDSD DDETPYPSRP NAIYTSSLPS RRSIRNPNFY PRNTHYDEYN NEYQYNNYDD 60 DEESDENENQ EFSTGENEFV TFQGTHKKKR KLETLVLNYE FAPRLGSHSS KEMWSEEESF 120 VLLEVWGERY LDLGRRSLRA EDWGEVAEKV TEMIGVDKSE IECRNQLDVL KKKYKKEITK 180 MEKTGGGFHS KWPFFKKMDM LMNLRMKGHC GLGCGLDSGE YVFMDPRMYL DRSNVLDEMR 240 DSPAGSDADN DEEEEEQGSG GWKGDDESAK LLADSIQRFG HIYEKIENSK RKQMMELEKI 300 RMDFQRELEL QKKQIVERAQ VEIAKIRDNS ENDDNEDEDC ANADNVSCEK LRG

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MIVVNMNDSD DDETPYPSRP NAIYTSSLPS RRSIRNPNFY PRNTHYDEYN NEYQYNNYDD  60
DEESDENENQ EFSTGENEFV TFQGTHKKKR KLETLVLNYE FAPRLGSHSS KEMWSEEESF  120
VLLEVWGERY LDLGRRSLRA EDWGEVAEKV TEMIGVDKSE IECRNQLDVL KKKYKKEITK  180
MEKTGGGFHS KWPFFKKMDM LMNLRMKGHC GLGCGLDSGE YVFMDPRMYL DRSNVLDEMR  240
DSPAGSDADN DEEEEEQGSG GWKGDDESAK LLADSIQRFG HIYEKIENSK RKQMMELEKI  300
RMDFQRELEL QKKQIVERAQ VEIAKIRDNS ENDDNEDEDC ANADNVSCEK LRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-72	Trihelix family protein