PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17165.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 475aa MW: 52285.3 Da PI: 8.5226

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	155.6	8.7e-49	129	232	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+atdfknh+lPlarik i+kadedv+misae+Pvl++kac+ fi eltl swlhaeenk rtl+k+diaaa++rtd+fdflvdi+ PHU17165.1 129 QLQMFWNYQrqeIEQATDFKNHQLPLARIKMIMKADEDVHMISAETPVLFAKACDRFIQELTLCSWLHAEENKCRTLQKNDIAAAISRTDTFDFLVDII 227 89***998899********************************************************************************** PP NF-YC 97 prdel 101 prde+ PHU17165.1 228 PRDEV 232 *87 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MSEIILVEFG SRKYCSGTSR GRGIRYGNLC GRHQRFIRIL VKVEVAVVRL QMTTKCGTPY 60 NPTTTWAIWS SLLTWRPSPQ PKFAARVGVS DFDMPQAEAS AAAAAATAAA AQSAAYPPQR 120 PYDRVLQQQL QMFWNYQRQE IEQATDFKNH QLPLARIKMI MKADEDVHMI SAETPVLFAK 180 ACDRFIQELT LCSWLHAEEN KCRTLQKNDI AAAISRTDTF DFLVDIIPRD EVKDEGVGLG 240 LSPGGVPYYY PPLGQLAPGG VMLDRPAVPG TVPGVVPGTV PGVVPGVDPS MYVPHLPFQV 300 WRSMRKTSED HSHPSGGGSS CSGQATDDSQ MKMTNDSQVQ DAATTVRETS ISTTCCTNAP 360 PTMAPAEKSE KFAEDNKVAK RRSRGNSALS GENIVEDDPK NSKKSNKDGN ESNQPNKKFK 420 GKCFNCGKIR HKSTDFCTPN KGKKKDQENL AESKKETVDL CAMLSECNQV ENSRK

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MSEIILVEFG SRKYCSGTSR GRGIRYGNLC GRHQRFIRIL VKVEVAVVRL QMTTKCGTPY  60
NPTTTWAIWS SLLTWRPSPQ PKFAARVGVS DFDMPQAEAS AAAAAATAAA AQSAAYPPQR  120
PYDRVLQQQL QMFWNYQRQE IEQATDFKNH QLPLARIKMI MKADEDVHMI SAETPVLFAK  180
ACDRFIQELT LCSWLHAEEN KCRTLQKNDI AAAISRTDTF DFLVDIIPRD EVKDEGVGLG  240
LSPGGVPYYY PPLGQLAPGG VMLDRPAVPG TVPGVVPGTV PGVVPGVDPS MYVPHLPFQV  300
WRSMRKTSED HSHPSGGGSS CSGQATDDSQ MKMTNDSQVQ DAATTVRETS ISTTCCTNAP  360
PTMAPAEKSE KFAEDNKVAK RRSRGNSALS GENIVEDDPK NSKKSNKDGN ESNQPNKKFK  420
GKCFNCGKIR HKSTDFCTPN KGKKKDQENL AESKKETVDL CAMLSECNQV ENSRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-59	NF-YC family protein