PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16850.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 367aa    MW: 40675.4 Da    PI: 5.2857
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17282315134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+k+LCnaCG++y+k +
  PHU16850.1 282 CLHCEITKTPQWRAGPMGPKSLCNACGVRYKKGR 315
                 99******************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MGSNFGDEID CSSFFDHMED LIEFFPENEC GGLDAVDCKD FPSWNDECAG LDAVGCKDFQ  60
NIWNDPLPDT DPLFSGSYSN SASDFSAELS VPDVVCECLN EGLSEAASLP CELGYEDIAH  120
LEWLSTFVED SFSCEGLTLG KEHCRVDKEP SDSKFLTSST VSVLESSSSS SSSSSSSSSS  180
GPGKTIPPLS PCHRGPQRAR SKRPRPTTFN PRPVNQLMFP TSLLPQQFVV PPGVHSLESE  240
SFAEESSPMK KKKKRIKFSI SRPPIETLHD DHNPEPQEVR KCLHCEITKT PQWRAGPMGP  300
KSLCNACGVR YKKGRLYPEY RPAASPTFVP SLHSNSHKKV MEMRTSVFPD DTQYYYKPPK  360
PTNHRPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-37GATA family protein