PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16539.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 1272aa MW: 141372 Da PI: 8.974

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	1180	1203	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp C+k F ++ +L++H r+H PHU16539.1 1180 VCPveGCKKKFFSHKYLVQHRRVH 1203 69999*****************99 PP
2	zf-C2H2	11.9	0.00071	1239	1265	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H PHU16539.1 1239 YVCAetGCGQTFRFVSDFSRHKRKtgH 1265 89********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1272 aa Download sequence
MAEASGNIEV FPWLKTLPVA PEYYPTLEEF QDPIAYIFKI EKEASKYGIC KIVPPVPAPK 60 QKTALANLNR SLSARPGSNG PTFTTRQQQI GFCPRKHRPV KKPVWQSGET YTVQQFQAKA 120 KAFEKNYLKR NSKRALTALE IETLYWKATV DKPFSVEYAN DMPGSAFAPK KAGSGSVGAG 180 GIGEVATLAD TEWNMRGVSR SKGSLLKFMK EEIPGVTSPM VYLAMMFSWF AWHVEDHDLH 240 SLNYLHMGAG KTWYGVPRDA AVAFEEVISV QGYAGETNPL VTFATLGEKT TVMSPEVLLS 300 AGIPCCRLVQ NAGDFVVTFP RAYHSGFSHG FNCGEASNIA TPEWLRFAKD AAIRRASTNC 360 PPMVSHFQLL YDLALSLCSR VPKNIRIEPR SSRLKDKKRS EGDMLVKELF VEDLNSNNYL 420 LHVLGEGSPV VLLPQTSTGI SICSNLVAGT QSKVNSRLFL GLSSSDHELR SQKDIGYDHF 480 KLGRKQGMKQ VASVSSEKGK YSSLHSGNRL PDSGRKDDAQ SSPETERVNL DTGRGMNHKC 540 DTLSEQGLFS CVTCGILCYT CVAIIRPTEA AAHHLMSSDY HNFNDWTGNV GGVFATGRDP 600 NAGESDSSSG GLVKTAPGDF IDAPVESSDR IQKLNNGSVE GVPRTKARKE TSSLGLLALA 660 YANSSDSDED EVEADIPVEA CESRHTDSDD EVFLQVIDPY ANHRQRRAVS QGRSCQKIDN 720 SSPSGESNTL FGRSSHQLRS NQVTAKCISN KGEIAQNNAV APFDNTHMQF TSASDEDSFR 780 IHVFCLQHAV QVEEQLRQIG GADISLLCHP DYPKLEAQAK KVAEELGSDH FWRDISFREA 840 TKEDEEMIQS ALEIQEAIHG NGDWTVKLDI NLFYSANLSR SPLYSKQMPY NFIIYNAFGR 900 DSPDNTPEKS EYTGRGSGKQ RRAVVAGKWC GKVWMSSQVH PLLAERDIDE EQEQNKNISV 960 QIKTEVKSER PRERTVTGKT VATTCKTGKK RNSTAEDRNA SNTQLIADDH DDSLLCSLLQ 1020 QHRKTNFRSK RIKYETPEPQ KDVDKKKRFG SLIDDDPDGG PSARLNVDKK KRFGSLIDDD 1080 PDGGPSTRLR KRVPKPSKES AAKLIKAKPA TTKQDESKKG PKVKLPSVNS TAKKEPVMKS 1140 PRSNTGRKMR DKEGEYHCDL EGCSMSFSSK PELTLHKKNV CPVEGCKKKF FSHKYLVQHR 1200 RVHMDDRPLK CPWKGCKMTF KWAWARTEHI RVHTGARPYV CAETGCGQTF RFVSDFSRHK 1260 RKTGHVSKKG RG

Sequence ? help Back to Top

Protein Sequence Length: 1272 aa Download sequence

MAEASGNIEV FPWLKTLPVA PEYYPTLEEF QDPIAYIFKI EKEASKYGIC KIVPPVPAPK  60
QKTALANLNR SLSARPGSNG PTFTTRQQQI GFCPRKHRPV KKPVWQSGET YTVQQFQAKA  120
KAFEKNYLKR NSKRALTALE IETLYWKATV DKPFSVEYAN DMPGSAFAPK KAGSGSVGAG  180
GIGEVATLAD TEWNMRGVSR SKGSLLKFMK EEIPGVTSPM VYLAMMFSWF AWHVEDHDLH  240
SLNYLHMGAG KTWYGVPRDA AVAFEEVISV QGYAGETNPL VTFATLGEKT TVMSPEVLLS  300
AGIPCCRLVQ NAGDFVVTFP RAYHSGFSHG FNCGEASNIA TPEWLRFAKD AAIRRASTNC  360
PPMVSHFQLL YDLALSLCSR VPKNIRIEPR SSRLKDKKRS EGDMLVKELF VEDLNSNNYL  420
LHVLGEGSPV VLLPQTSTGI SICSNLVAGT QSKVNSRLFL GLSSSDHELR SQKDIGYDHF  480
KLGRKQGMKQ VASVSSEKGK YSSLHSGNRL PDSGRKDDAQ SSPETERVNL DTGRGMNHKC  540
DTLSEQGLFS CVTCGILCYT CVAIIRPTEA AAHHLMSSDY HNFNDWTGNV GGVFATGRDP  600
NAGESDSSSG GLVKTAPGDF IDAPVESSDR IQKLNNGSVE GVPRTKARKE TSSLGLLALA  660
YANSSDSDED EVEADIPVEA CESRHTDSDD EVFLQVIDPY ANHRQRRAVS QGRSCQKIDN  720
SSPSGESNTL FGRSSHQLRS NQVTAKCISN KGEIAQNNAV APFDNTHMQF TSASDEDSFR  780
IHVFCLQHAV QVEEQLRQIG GADISLLCHP DYPKLEAQAK KVAEELGSDH FWRDISFREA  840
TKEDEEMIQS ALEIQEAIHG NGDWTVKLDI NLFYSANLSR SPLYSKQMPY NFIIYNAFGR  900
DSPDNTPEKS EYTGRGSGKQ RRAVVAGKWC GKVWMSSQVH PLLAERDIDE EQEQNKNISV  960
QIKTEVKSER PRERTVTGKT VATTCKTGKK RNSTAEDRNA SNTQLIADDH DDSLLCSLLQ  1020
QHRKTNFRSK RIKYETPEPQ KDVDKKKRFG SLIDDDPDGG PSARLNVDKK KRFGSLIDDD  1080
PDGGPSTRLR KRVPKPSKES AAKLIKAKPA TTKQDESKKG PKVKLPSVNS TAKKEPVMKS  1140
PRSNTGRKMR DKEGEYHCDL EGCSMSFSSK PELTLHKKNV CPVEGCKKKF FSHKYLVQHR  1200
RVHMDDRPLK CPWKGCKMTF KWAWARTEHI RVHTGARPYV CAETGCGQTF RFVSDFSRHK  1260
RKTGHVSKKG RG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1045	1071	KKKRFGSLIDDDPDGGPSARLNVDKKK
2	1069	1095	KKKRFGSLIDDDPDGGPSTRLRKRVPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein