PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16526.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 403aa MW: 46056.2 Da PI: 6.3119

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.6	8.2e-24	88	185	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e+ +++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l PHU16526.1 88 KWTDEMVRLLITAVSYIGEETAAAEygggrrkcsnnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDML 185 7*****************99987777888889999********************************************569999888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MSCYGGFDFQ GSTRANQQQV QHHQSNSKQG SMAINANFPL TIGGSNQNIS LADYNSKGER 60 GKSASDDDEP SFIEDGGKKG ATPWQRVKWT DEMVRLLITA VSYIGEETAA AEYGGGRRKC 120 SNNLHKKGKW KSVSKVMAER GHFVSPQQCE DKFNDLNKRY KRLNEILGRG TSCEVVENPA 180 LLDMLGHVSD KGKEEVRKIL SSKHLHYEEM CSYHNGNRLH LPPDPELKHS LHLALKSRDE 240 YDDNDARKKH PQDDNDEDDH EAADLEDRGD EYEENHRLHG GTSGGFSKRI KQCQGHETVT 300 SLTTLDCNRS LIPQPQTDVS QVFPEGDKAK QWLDQCALQL EDQKLQLQAQ MLELEKERFN 360 WQRFSRKKDI ELEVMRMENE RLKLENERIA LELKRKELFA DNA

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MSCYGGFDFQ GSTRANQQQV QHHQSNSKQG SMAINANFPL TIGGSNQNIS LADYNSKGER  60
GKSASDDDEP SFIEDGGKKG ATPWQRVKWT DEMVRLLITA VSYIGEETAA AEYGGGRRKC  120
SNNLHKKGKW KSVSKVMAER GHFVSPQQCE DKFNDLNKRY KRLNEILGRG TSCEVVENPA  180
LLDMLGHVSD KGKEEVRKIL SSKHLHYEEM CSYHNGNRLH LPPDPELKHS LHLALKSRDE  240
YDDNDARKKH PQDDNDEDDH EAADLEDRGD EYEENHRLHG GTSGGFSKRI KQCQGHETVT  300
SLTTLDCNRS LIPQPQTDVS QVFPEGDKAK QWLDQCALQL EDQKLQLQAQ MLELEKERFN  360
WQRFSRKKDI ELEVMRMENE RLKLENERIA LELKRKELFA DNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-134	Trihelix family protein