PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16384.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 283aa MW: 32640 Da PI: 4.5439

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16384.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ll++++++ G ++W++ ++ g+ R++k+c++rw +yl PHU16384.1 14 RGPWSKEEDDLLINYINKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	49.1	1.3e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE++ ++++++ lG++ W+tIa++++ gRt++++k+ w++ PHU16384.1 67 RGNFTNEEEDTIIKLHQVLGNR-WSTIAARLP-GRTDNEIKNIWHT 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MGRTPCCEKL GLKRGPWSKE EDDLLINYIN KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY 60 LKPDIKRGNF TNEEEDTIIK LHQVLGNRWS TIAARLPGRT DNEIKNIWHT RLKKKISKSH 120 AQKIPELQEE TSMETSKSDE QNLDTHLEPE NSNLDIHLES DNSKDNCEIS SPKTNNEIQQ 180 QSSSSVHSSS SISSSSEDAC SNTTATSPEP RDQFMLDNLV EIDDDFWSDV LWTTVDDSNY 240 NDNNFDLPLM EDNYQINPSL NDNWFWDDLF TRSNELMLEL SEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	2e-72	MYB family protein