PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16244.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 235aa MW: 25445.1 Da PI: 8.7184

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.6	3.2e-41	53	152	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++ PHU16244.1 53 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLMEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQNLQAELNSIRA 151 7**********************************************************************************************9987 PP DUF260 100 e 100 e PHU16244.1 152 E 152 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MMNRERMDEM GKKLKTEIID ASNSQLNMQQ LQMGRRHVLG PVAGGTTLNH VTPCAACKLL 60 RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKLLME VPVGQRADAA NSLVYEANVR 120 LRDPVYGCMG AISALQQQIQ NLQAELNSIR AEILRYKYRE AANSLIIASI STSVAPELPQ 180 APPTPPPPPP PPSMVVVSSS SSSTSSASSN LYTPASSSVA NFSAITNNSI AYFDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	8e-74	LBD family protein