PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16164.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 341aa    MW: 38358.5 Da    PI: 8.102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-111371148
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +l+++vkq+G + W+ Ia++mg  R +kqc++rw+++l
       PHU16164.1  1 KLLRLVKQFGVRKWAQIAEKMG-ARAGKQCRERWHNHL 37
                     699*******************.*************97 PP
2Myb_DNA-binding57.63e-184385145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ W++eE++llv+++k+lG++ W+ Ia++++ gRt++ +k++w+
       PHU16164.1 43 KDTWSEEEELLLVELHKLLGNK-WAEIAKRIP-GRTENAIKNHWN 85
                     679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
KLLRLVKQFG VRKWAQIAEK MGARAGKQCR ERWHNHLRPD IKKDTWSEEE ELLLVELHKL  60
LGNKWAEIAK RIPGRTENAI KNHWNATKRR QNSRRNKNKK TQQADGTQCE NKSHRSTVLQ  120
DYIRSKYFMN DDNSPLTATL YYGSGGTASG GGYSPSTTTF IGSTSNATNA TPTYSDDDSP  180
YLITHQTYDE EMNFMQSLFG NSNNINGTKV MGTMETNVVT QDLLDKSSSS SSFGLNSSGE  240
IPLAECNVES YTTTKRVIAD NNARNYIPDY SQYYPQDLYL SRLLDGSLVP NYSDCFECGS  300
MNNQAGCSSS GGNIKEVDLM EMMNSTNSQF SQPGTFNKTF F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-42MYB family protein