PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15902.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 440aa MW: 48278.8 Da PI: 8.6438

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.5	1.4e-12	209	257	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k PHU15902.1 209 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKT 257 79******.7**5553..2.26******99********886 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MMLDLNVNVI YNELPEGSVP DESGTSNSSL LNAEATTSTG DGESCSTRAG EIFVFNFGIL 60 KVGGAETSRN INNNDEDRRV VSHSEFVTRQ LFPVDNGELN RKQTDRVILP GFGSELPKPQ 120 VKKSRRGPRS RSSQYRGVTF YRRTGGFDTA HTAARAYDRA AIKFRGVDAD INFNLSDYEE 180 DMKQMKNLGK EEFVHLLRRH SNGFSRGSSK FRGVTLHKCG RWEARMGQFL GKKYIYLGLF 240 DSEVEAARAY DKAAIKTSGR EAVTNFEPSA YEGETMSEPQ IEGSQHDLDL NLGISTSSSK 300 ENGRLGGSCY HPYDIQDATK PKMHKPGPLI VGSSHLKGLP MTSQQAQSWT GIYSNFSSSY 360 EGRTSDKRKD IGSSQGPPNW SLQMPSQVAT TTPLTMFCTA ASSGFFVPAT ASITSSTSAL 420 APSTNASQCF YQISPRLPPP

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MMLDLNVNVI YNELPEGSVP DESGTSNSSL LNAEATTSTG DGESCSTRAG EIFVFNFGIL  60
KVGGAETSRN INNNDEDRRV VSHSEFVTRQ LFPVDNGELN RKQTDRVILP GFGSELPKPQ  120
VKKSRRGPRS RSSQYRGVTF YRRTGGFDTA HTAARAYDRA AIKFRGVDAD INFNLSDYEE  180
DMKQMKNLGK EEFVHLLRRH SNGFSRGSSK FRGVTLHKCG RWEARMGQFL GKKYIYLGLF  240
DSEVEAARAY DKAAIKTSGR EAVTNFEPSA YEGETMSEPQ IEGSQHDLDL NLGISTSSSK  300
ENGRLGGSCY HPYDIQDATK PKMHKPGPLI VGSSHLKGLP MTSQQAQSWT GIYSNFSSSY  360
EGRTSDKRKD IGSSQGPPNW SLQMPSQVAT TTPLTMFCTA ASSGFFVPAT ASITSSTSAL  420
APSTNASQCF YQISPRLPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	3e-92	AP2 family protein