PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15873.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 535aa MW: 58455.1 Da PI: 9.3895

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PHU15873.1 67 FICEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	12.9	0.00032	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + PHU15873.1 144 WKCEKCSKKYAVQSDWKAHTKIC 166 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MMSDDGLSSL AFIQDPNSNL NSNPSGNNPN PNSNPSAKRK RNLPGKPDPD AEVVALSPKS 60 LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCIHHD 120 PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS 180 RKDSFITHRA FCDALAEESA RLTSVPSTAN LNFRNEILLN SGFGNNLQHS GNPQFGSNLF 240 RPEFMGLGLD PVISHQQQQL NNVDGHKPRL PLWLDNNMNP SPGNDFLVAS SSSTTSNLPH 300 HELVQIAGHN NNQQWFMNAG GGDDSGIGSS SSQLPSRVLL KEEEENKRNL SETISSMYYN 360 SHHNETTAPS ATHMSATALL QKAAQMGSTR SNSALFGTGF GLMGSSFSKS NGQGQFAAQD 420 QNFNGLMMNS PSTVSSLTTN ISNQGNRLLF GDMSSSSLEG GNASAKNSDP FNLMSRNKGK 480 QVNLSGNEPI EGGLTRDFLG VGGNESRPFL SKNELAKFGN ISGSAMGLSD YSGSH

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MMSDDGLSSL AFIQDPNSNL NSNPSGNNPN PNSNPSAKRK RNLPGKPDPD AEVVALSPKS  60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCIHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESA RLTSVPSTAN LNFRNEILLN SGFGNNLQHS GNPQFGSNLF  240
RPEFMGLGLD PVISHQQQQL NNVDGHKPRL PLWLDNNMNP SPGNDFLVAS SSSTTSNLPH  300
HELVQIAGHN NNQQWFMNAG GGDDSGIGSS SSQLPSRVLL KEEEENKRNL SETISSMYYN  360
SHHNETTAPS ATHMSATALL QKAAQMGSTR SNSALFGTGF GLMGSSFSKS NGQGQFAAQD  420
QNFNGLMMNS PSTVSSLTTN ISNQGNRLLF GDMSSSSLEG GNASAKNSDP FNLMSRNKGK  480
QVNLSGNEPI EGGLTRDFLG VGGNESRPFL SKNELAKFGN ISGSAMGLSD YSGSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-104	C2H2 family protein