PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15707.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 453aa MW: 50970.6 Da PI: 5.6217

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.3	7.6e-22	126	223	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ + + +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++ d++ PHU15707.1 126 KWTDNVVRLLIQVVACVGDDGSLEGpevglkrksgciQKKGKWKTVSRLMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPSLMDSM 223 7************7777777432245555666779********************************************669999999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MNSSGMGGGF LSGYNGGFLG MNRLQQPQSI SNNAVHGHQT NHSNVQLSVS ANLGLEHDKP 60 IGLMDIKGCM AFGKDKAAGP SNVVNTGNNP NNNTSDEDEP SFTEDGNGDN NCGALGKKAS 120 PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG PEVGLKRKSG CIQKKGKWKT VSRLMMSNGC 180 HVSPQQCEDK FNDLNKRYKK LNDILGRGTS CAVVENPSLM DSMPQLSDKA KDTVKKILNS 240 KHLFYREMCA YHNGQKIPDC NDLEFPVHSS PVASQCAKDH TGSQGHEAEE NDESDDDDEE 300 SDDEEDNHGN GDARRRVEED GSFQPQTSGN DNFLSEINEF FQDPTKSKWE QRMWIKKRML 360 QLEEEKIGIQ AEAFELEKRQ FKWQRFCQKK DRELEIERLE NERLMLENEH MKLQLKHKEH 420 EIVSAKPNIS FNSAPLCLDR PQGRDQIDAA RYH

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MNSSGMGGGF LSGYNGGFLG MNRLQQPQSI SNNAVHGHQT NHSNVQLSVS ANLGLEHDKP  60
IGLMDIKGCM AFGKDKAAGP SNVVNTGNNP NNNTSDEDEP SFTEDGNGDN NCGALGKKAS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG PEVGLKRKSG CIQKKGKWKT VSRLMMSNGC  180
HVSPQQCEDK FNDLNKRYKK LNDILGRGTS CAVVENPSLM DSMPQLSDKA KDTVKKILNS  240
KHLFYREMCA YHNGQKIPDC NDLEFPVHSS PVASQCAKDH TGSQGHEAEE NDESDDDDEE  300
SDDEEDNHGN GDARRRVEED GSFQPQTSGN DNFLSEINEF FQDPTKSKWE QRMWIKKRML  360
QLEEEKIGIQ AEAFELEKRQ FKWQRFCQKK DRELEIERLE NERLMLENEH MKLQLKHKEH  420
EIVSAKPNIS FNSAPLCLDR PQGRDQIDAA RYH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-61	Trihelix family protein