PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15477.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 178aa MW: 19514.9 Da PI: 7.2018

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.2	3.4e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+l++el+++++ PHU15477.1 10 PCAACKFLRRKCLPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNELLPHQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLQKELDAANA 108 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MASSSCYNSP CAACKFLRRK CLPDCIFAPY FPPEEPHKFA NVHKIFGASN VSKLLNELLP 60 HQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLQ KELDAANADL MRYASGNDMS 120 SAPLIGPHHQ QEIGSTLHNM ALSRRMGYGH HGGGYFPYSP SSWNDQNPSG GGGGGENV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	6e-74	LBD family protein