PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU15474.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 320aa    MW: 37065.5 Da    PI: 6.6756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU15474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ede+l+++++++G g+W+++++  g+ R++k+c++rw +yl
       PHU15474.1 14 RGLWSPDEDEKLYNYITRFGVGCWSSVPKLSGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding50.16.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE++ ++ +++ lG++ W+ Ia++++ gRt++++k++w++yl
       PHU15474.1  67 RGTFSLEEEDMIITLHEVLGNR-WAQIAAKLP-GRTDNEIKNYWNSYL 112
                      899*******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRHSVYVKE KLRRGLWSPD EDEKLYNYIT RFGVGCWSSV PKLSGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEEDMIIT LHEVLGNRWA QIAAKLPGRT DNEIKNYWNS YLKKKLIKQG  120
IDPNTHKPLS ENHQVRNDTN CTDKASMLLM STFPNMSNSV EIEQPFHFNK RIFNSEAITR  180
QLTEVSRNQL VSKQVFDPLF LYDFQANMNP IGPYDGNQDF GICSMPNLTN FEHGHMTESD  240
FSDSSTSRMS TSNRTNTMIR HHSSAGIHQM NEMLENSQEL TWDADNKIDS LFEYPYDGIK  300
NEEDFSNNNN NNNNPLSSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-74MYB family protein