PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15390.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 406aa MW: 45865.5 Da PI: 8.4723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.6	1.5e-15	204	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN ++ L++l+P+a K +Ka++Le++++Y+k+Lq PHU15390.1 204 IHNQSERRRRDRINGKMKALQKLVPNA-----SKTDKASMLEEVIRYLKQLQ 250 5***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MSRYTWNFSH QKQEQQIVEE EEENRYPRGH VHNQQDRNHL DPMSSKCEVA ELTWENGQVA 60 MHRLGSNLPK EQAKHTWGKA GDTLESIVHQ ATFQKQNHNS KLMGISDGHN SQANIDREKN 120 ASYGGQQTRG VLKRMRSDSD PQLYGGGRSV ELISAHANAK ENDITMVTWP CNEDSDCHGG 180 SENKEEERET KSSNLLKRSR RAAIHNQSER RRRDRINGKM KALQKLVPNA SKTDKASMLE 240 EVIRYLKQLQ AQVQLITSAR NMEQQIMMMS LGMQPHIQMP LLARMGMDCT AGMLNNMTAN 300 LPRAPYHSLT AAPLFYPTSS IPTLCPPFMS PAFAMTSSIP NGDAVSSAAA PNVATTSVPF 360 NHPYSAFLPQ SMKMEFNNEM ASQYQSMQTR NSKFNQENIN IQDQKE

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MSRYTWNFSH QKQEQQIVEE EEENRYPRGH VHNQQDRNHL DPMSSKCEVA ELTWENGQVA  60
MHRLGSNLPK EQAKHTWGKA GDTLESIVHQ ATFQKQNHNS KLMGISDGHN SQANIDREKN  120
ASYGGQQTRG VLKRMRSDSD PQLYGGGRSV ELISAHANAK ENDITMVTWP CNEDSDCHGG  180
SENKEEERET KSSNLLKRSR RAAIHNQSER RRRDRINGKM KALQKLVPNA SKTDKASMLE  240
EVIRYLKQLQ AQVQLITSAR NMEQQIMMMS LGMQPHIQMP LLARMGMDCT AGMLNNMTAN  300
LPRAPYHSLT AAPLFYPTSS IPTLCPPFMS PAFAMTSSIP NGDAVSSAAA PNVATTSVPF  360
NHPYSAFLPQ SMKMEFNNEM ASQYQSMQTR NSKFNQENIN IQDQKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	213	RAAIHNQSERRRR
2	209	214	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-41	bHLH family protein