PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU13472.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 495aa MW: 53098.5 Da PI: 4.3388

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU13472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.2e-15	427	473	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq PHU13472.1 427 VHNLSERKRRDRINEKMRVLQELIPRC-----NKADKASMLDEAIEYLKSLQ 473 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MMELIWQNGQ IIVQSQRQNQ RSMMKKSHLL EATVASSVPV YIQEDDEMNC WLQSPFDDDD 60 DDDSSFAADF LCTPPCSAAE ETPEEIDATM SCAAVNSAAE LPGEIDKISS AAMISAALPG 120 EIDTTPSCAA VISAAELPVE IDKIDDMQSC AAMISAAMPG DIDTTPSYAA VISAAALPGE 180 THKIDNMQSC AAVISAAAQP GETIASSSPP RPIIPQLRCT EGEVTHRLQD FQYAKPNCAV 240 VTSAATPEEE IDKIDALTVE IRPAETIASS SARPILPVLR CTEGESLQNF KHFSRNCTSN 300 SGHSVKASTV VESNETPIAS VPEHIHSRVL DNATSVSAAA ATVAVSGGKE VMTSTFELAM 360 TSSTSGSGSA GEEPPHAAAM AVDDRKRRIS EFVDDEGQNE DVEFESADAK KQVKSSTSAK 420 RSRAAEVHNL SERKRRDRIN EKMRVLQELI PRCNKADKAS MLDEAIEYLK SLQLQVQMMS 480 TGCSMVPMMY PGFPQ

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MMELIWQNGQ IIVQSQRQNQ RSMMKKSHLL EATVASSVPV YIQEDDEMNC WLQSPFDDDD  60
DDDSSFAADF LCTPPCSAAE ETPEEIDATM SCAAVNSAAE LPGEIDKISS AAMISAALPG  120
EIDTTPSCAA VISAAELPVE IDKIDDMQSC AAMISAAMPG DIDTTPSYAA VISAAALPGE  180
THKIDNMQSC AAVISAAAQP GETIASSSPP RPIIPQLRCT EGEVTHRLQD FQYAKPNCAV  240
VTSAATPEEE IDKIDALTVE IRPAETIASS SARPILPVLR CTEGESLQNF KHFSRNCTSN  300
SGHSVKASTV VESNETPIAS VPEHIHSRVL DNATSVSAAA ATVAVSGGKE VMTSTFELAM  360
TSSTSGSGSA GEEPPHAAAM AVDDRKRRIS EFVDDEGQNE DVEFESADAK KQVKSSTSAK  420
RSRAAEVHNL SERKRRDRIN EKMRVLQELI PRCNKADKAS MLDEAIEYLK SLQLQVQMMS  480
TGCSMVPMMY PGFPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	432	437	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	5e-34	bHLH family protein