PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHU13288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 27114.6 Da PI: 6.7118 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3e-15 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed +l++ + +lG g+W++ ar g++R++k+c++rw++yl PHU13288.1 9 KGPWSSDEDSKLIHSISLLGQGRWDSLARFAGLKRSGKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.6e-14 | 62 | 105 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++ ++ ++G++ W++Ia+ ++ gR+++++k++w++ PHU13288.1 62 RGKITPQEQLLIILLHFRFGNR-WSKIAENLP-GRSDNDVKNYWRT 105 8999******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence |
MEASMEMKKG PWSSDEDSKL IHSISLLGQG RWDSLARFAG LKRSGKSCRL RWLNYLRPNL 60 RRGKITPQEQ LLIILLHFRF GNRWSKIAEN LPGRSDNDVK NYWRTKVQKH AKELHCNVNN 120 SHQFRHFLLY QWLPSLLAQQ ILPTTPPSSP NNTMTCPNAD FISSPEDDNT RYNIWNNLSS 180 FEDEINISHD YSIPTDDEYY CHNYWPTTPS QVLLPDEMLC LDDDMDLWLF P |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48000.1 | 8e-59 | MYB family protein |