PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12260.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 337aa    MW: 38461.1 Da    PI: 5.9678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++++G+g+W+t ++  g+ R++k+c++rw +yl
       PHU12260.1 14 KGPWTPEEDNKLIQYIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ +E+e +++++  lG++ W++Ia++++ gRt++++k++w+++
       PHU12260.1  67 RGRFSFDEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MGRSPCCDKN GLKKGPWTPE EDNKLIQYIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFDEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG  120
IDPVTHSPRL DLLDLSSLLN STQFNLSSLL GLQALINPEV FRLATTLLAS HNESSPELLL  180
QKLQENNQMF SNSQLQNQEG SELLLQKLQQ NQLLNAQVQN QPQFFQYQNQ IQEIPNFTTT  240
QNVACSSSLS QPMQLLGHVD ESYLMNGQML PPQNYGYCNS DASDNSTFQS LNNNSSNQNF  300
SLDNSVLSTP TEDEKESYCS NLMKFEIPES LNFDDFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.14e-90MYB family protein