PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU10874.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 394aa MW: 41153.8 Da PI: 6.6505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU10874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	209	254	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq PHU10874.1 209 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 254 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MQAMNSLLSE QHDDFLEQIL SSVPSNSSPW PEFSKSSWDP HHHHLSSPPP PPPPQNPNSV 60 DEQSPFIYDD QASSLLASKL RQHQINGGGG SAAAAAAAAA KALMLQQQQL LLSRTLAGNG 120 DNDGGVNDSS VQALFNGFTG SLGQTSNQSH HFHLPQGGAM NSQSFGAPVA SPAMNQTPAA 180 SGSAGTTPAP AQPKQQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA 240 SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGRGNGNGN VTASSSNNDT 300 MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRNPP MIPNGVNNTN 360 GGGGPTSPSL SALTVQSATL VGNAVKDSTS VSEA

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MQAMNSLLSE QHDDFLEQIL SSVPSNSSPW PEFSKSSWDP HHHHLSSPPP PPPPQNPNSV  60
DEQSPFIYDD QASSLLASKL RQHQINGGGG SAAAAAAAAA KALMLQQQQL LLSRTLAGNG  120
DNDGGVNDSS VQALFNGFTG SLGQTSNQSH HFHLPQGGAM NSQSFGAPVA SPAMNQTPAA  180
SGSAGTTPAP AQPKQQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA  240
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGRGNGNGN VTASSSNNDT  300
MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRNPP MIPNGVNNTN  360
GGGGPTSPSL SALTVQSATL VGNAVKDSTS VSEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	219	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-71	bHLH family protein