PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU10565.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 307aa MW: 35318.3 Da PI: 8.1201

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU10565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.8	1.7e-14	241	294	48	101
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++e++r d+++sl+yeA +r++dPvyG+vg+i++l++++ +++ +l+ +++++ PHU10565.1 241 QVEEHQRGDVADSLYYEAYWRIKDPVYGCVGIITALHEEIYHVQFQLDNVQAQI 294 5799*******************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MKCNEISHFS HPQHKLRYEY SEFPFKCDGC KEVGIGSRYK CTNCDYDLHM HCAIPSPSIT 60 HPFYTKCSFQ FLSRPPGNVP RYCNACEKDI TGFLYHCRSC GFDLHPCCAK LPMVLDDGDV 120 KLYLYRKVSA SCHRCGRKGR NKSWSYRSTC KKYNLHVACV KEMLVDSWHE IYFGHDNNYN 180 NSNTNYRKLE NRIPSLKGTL QTHHKKSKGK AQKCCEVAGL ALQFIISAVL GDPTTLIAGV 240 QVEEHQRGDV ADSLYYEAYW RIKDPVYGCV GIITALHEEI YHVQFQLDNV QAQIDLLYQN 300 GLYTFDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-12	LBD family protein