PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU10369.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 411aa    MW: 46141.8 Da    PI: 6.6374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU10369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.3e-19216263348
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48 
                  +n+sn qvtfskRr+g++KKA+ L+ LC+ae+a+++fs+   +k+y 
  PHU10369.1 216 MKNESNMQVTFSKRRAGLFKKASKLCKLCGAEIAIVVFSPgkANKVYS 263
                 58************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MIQGSKQWHE KLPFTLLGYR TTVRTSTGAT PYLLVYRTEA VIPAEVEIPS LQLIVEAEID  60
DDEWVEAKGK FSPNWQGPFV VKKVLPNGAL YLTDIEGKMA EMAINADAVK RYYDPPEKWD  120
FTFIQDPPEE WEFTFSSLSL FRLNLRLVLA CWVFFVGFRT GFWKLGYCFG FEVSDGISKV  180
TGLELDHSLN FGLSSSVNLA MARLSKGRRK VEIVKMKNES NMQVTFSKRR AGLFKKASKL  240
CKLCGAEIAI VVFSPGKANK VYSFGHPSVE LLVDMFLGRD LPPPNDDDSH NHLIRAHRNT  300
DQRRLNKEVM DMQESLQKEK AVGKSLLESR RGAYDRVCES PIIEGLSLSQ LEQLKEALES  360
QKRKVEFEAE LQQMGSDAPL PFLTFGSALS PTSGDGASSS HEPNVGAPFP N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-41M-type_MADS family protein