PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU10266.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 659aa MW: 73736.5 Da PI: 6.4336

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU10266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.6e-22	128	232	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 f+k+lt sd++++g +++ +++a+e+ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F ++ + +++ PHU10266.1 128 FCKTLTASDTSTHGGFSVLRRHADEClpqldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFLRQvYEgENG 224 99**************************964333..4459*******************************************9544344999 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v+r PHU10266.1 225 ELRVGVRR 232 9**997 PP
2	Auxin_resp	117.4	1.2e-38	258	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d+ ++rWp+S+WrsLk PHU10266.1 258 ASHAISTGTFFSVFYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDSTSSRWPDSEWRSLK 340 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MANLSGNNFV GVAHPGAPKN DALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST 60 HQGLDQQLPS FNLPAKILCK VMTVQLRAEP ETDEVYAQIT LIPEQDQGEI TSPDPPLPEP 120 QKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPQLDMS QQPPWQELVA SDLHGNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRQVYE GENGELRVGV RRLMRQLNNM 240 PSSVISSHSM HLGVLATASH AISTGTFFSV FYKPRTSQSE FIVSVNKYLE ARNHKLSVGM 300 RFKMRFEGEE VPERRFSGTI VGVGDSTSSR WPDSEWRSLK VHWDEPSSIL RPDRVSPWEM 360 EPLVTATPTN TQPPQRNKRA RPPVLPSPVK ELPALGMWKS PVDSPSSFSY CDPSRARDLY 420 PSPKLSSAAK GLGYGENGSM PLSTKMYWPS QSETCTESVA PASEKRPANG YRLFGIELLD 480 RPTIDETSLV SKPHAVMEDQ PDPSLDVECD QHSEPLNPIP SLSFEPEKSP LRSSHESQSK 540 QIRSCTKVHM QGKAVGRAVD LTRLAGYDDL LKKLEEMFEI EGELVGSTKK WLVVFTDDED 600 DMMMVGDDPW REFCSMVRKI YVYTAEEAKR LSPKIKLPVD DVKPGNPVSD ATVSNEGKA

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MANLSGNNFV GVAHPGAPKN DALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST  60
HQGLDQQLPS FNLPAKILCK VMTVQLRAEP ETDEVYAQIT LIPEQDQGEI TSPDPPLPEP  120
QKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPQLDMS QQPPWQELVA SDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRQVYE GENGELRVGV RRLMRQLNNM  240
PSSVISSHSM HLGVLATASH AISTGTFFSV FYKPRTSQSE FIVSVNKYLE ARNHKLSVGM  300
RFKMRFEGEE VPERRFSGTI VGVGDSTSSR WPDSEWRSLK VHWDEPSSIL RPDRVSPWEM  360
EPLVTATPTN TQPPQRNKRA RPPVLPSPVK ELPALGMWKS PVDSPSSFSY CDPSRARDLY  420
PSPKLSSAAK GLGYGENGSM PLSTKMYWPS QSETCTESVA PASEKRPANG YRLFGIELLD  480
RPTIDETSLV SKPHAVMEDQ PDPSLDVECD QHSEPLNPIP SLSFEPEKSP LRSSHESQSK  540
QIRSCTKVHM QGKAVGRAVD LTRLAGYDDL LKKLEEMFEI EGELVGSTKK WLVVFTDDED  600
DMMMVGDDPW REFCSMVRKI YVYTAEEAKR LSPKIKLPVD DVKPGNPVSD ATVSNEGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein