PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU10206.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 420aa MW: 47242 Da PI: 7.2584

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU10206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl PHU10206.1 14 KGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.3	4.3e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+ PHU10206.1 67 RGTFSQDEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPNTHKPLS EVESEEKASA NSNNKNNDKV SESSNNEFNF VEAHENGFST EKGINNMERY 180 PLIDHQANNI APPTHEFFTA NCKSPDLSSY LSFHNYSPNT NILFNTKNSS ADNMVSDHHQ 240 FNCSTLPNAT FSTMSSNSIL STSPLARTFN INKFQNWEAC TISSNGSNNS NGSSNSIELQ 300 SNCSFFDNSN AAAAAFTWGS TSAAAAADGS GKQEREEIKW SEYMQTPFSL GVNNNTIQNH 360 HHEISPHHQD LYDGETKSET QFMTHGTWLQ NQTPQTSLQT ADLYSNNNFQ RLPAVFGQFS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVESEEKASA NSNNKNNDKV SESSNNEFNF VEAHENGFST EKGINNMERY  180
PLIDHQANNI APPTHEFFTA NCKSPDLSSY LSFHNYSPNT NILFNTKNSS ADNMVSDHHQ  240
FNCSTLPNAT FSTMSSNSIL STSPLARTFN INKFQNWEAC TISSNGSNNS NGSSNSIELQ  300
SNCSFFDNSN AAAAAFTWGS TSAAAAADGS GKQEREEIKW SEYMQTPFSL GVNNNTIQNH  360
HHEISPHHQD LYDGETKSET QFMTHGTWLQ NQTPQTSLQT ADLYSNNNFQ RLPAVFGQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	5e-85	MYB family protein