PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU10025.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 262aa    MW: 28315.4 Da    PI: 6.6663
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU10025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.85.1e-40531531100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+aelal++
  PHU10025.1  53 PCGACKFLRRKCINGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRQDAVVTVTYEAQARLSDPVYGCVSTILALQQQVASLQAELALVQ 151
                 7***********************9989*********************************************************************99 PP

      DUF260  99 ee 100
                 ++
  PHU10025.1 152 TQ 153
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MNEPLTLPLT SNMDEPPSDG ASDQNRRIRG LGKRAAGAME PQGSGALPAS TAPCGACKFL  60
RRKCINGCVF APYFGSDQGA ARFAAVHKVF GASNVSKLLL HIPANRRQDA VVTVTYEAQA  120
RLSDPVYGCV STILALQQQV ASLQAELALV QTQVMNSRYA VANAFQYSQQ QQQEQHVAIL  180
QPSYSNNSSV SNNIKLINNI NGASNFNNST SSTAFDHQLH GSADTCTANN SPSFDPIHQL  240
HDDEEEESHN PLAFTNHMFH SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-54LBD family protein