PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU09911.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18553.8 Da    PI: 10.5147
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU09911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.1e-161258248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                +i  ++ r vtfskRr+g++KKA+EL  +++ ++a ++fs+tgk y+
  PHU09911.1 12 KITKETSRMVTFSKRRKGLFKKAKELESMTGCRIASVVFSPTGKPYT 58
                588899*************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MGTGKKKIEI QKITKETSRM VTFSKRRKGL FKKAKELESM TGCRIASVVF SPTGKPYTCG  60
DVEYAIQRHF SGNNNKNNSR STEPSTSGLN SRHSNSDDVA VASGDSSGSR SSSSSTPRRN  120
GLHDWVEGID VERCGNLNRL LMWKKQLEGT RKKIASIEDS ESFQALFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-12M-type_MADS family protein