PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09832.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 276aa MW: 30718.3 Da PI: 5.3109

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.3	1.8e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + PHU09832.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAGEMP KRRKVATEEH HDSEDEFKRS 120 RTEMSPACNS GRGRGRGRGR GRGRVSRADR ELSRPDMQLE SCATVQQSGQ QNPNPGTQTE 180 NSAEPEGSPK QDSTVCDKET SVVTAPSLKV NVDYSIDKPA APEIAACTPS PKPANEKAEE 240 GPQWSLEMDR MVIDPAHMSQ LNTSVAEEEE DYDEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	141	RGRGRGRGRG
2	132	142	RGRGRGRGRGR
3	134	143	RGRGRGRGRG
4	134	144	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-67	NF-YC family protein