PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09788.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 605aa MW: 67362.8 Da PI: 7.1579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	434	480	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PHU09788.1 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 480 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MVTGNMRWSD EDKANVAAVL GKDAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVERPN 60 PTNFSWNYAI FWQISRSKSG ELVLGWGDGC CREPREGEER EVRRIFNLRL DDEAQQRMRK 120 RVLQKLHLLF GGTDEDNYAL GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKHLWLS 180 DALTSNLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVI SIPESLELLH NIKSCFSSFL 240 SLVRAKQATG IAVVPEKKEG NNPHFSNSIA VTERPDGNPK IFGHDLNSGT HFREKLAVRK 300 AEERPWDMYQ NGNRMPFVNA RNGLHATSWV QFSNAKPGKP VEFYGPQTPA HNLVNGGRED 360 LPLNNFQHQN SAARMQIDFT GATSRPIVSP AQTIESEHSD VEASCKEDRA GLADEKRPRK 420 RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ 480 KRLRDMESER ELRLGSTSRD GMASEDSPSS EIQIRGPDIN IEAANDEVIV RVSCPLESHP 540 ISRVIQTFKE AKINVVDSKL SAGNGTVYHT FVLKSSGSEQ LTKEKLLAAF SSESNSQRQL 600 SPVGQ

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MVTGNMRWSD EDKANVAAVL GKDAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVERPN  60
PTNFSWNYAI FWQISRSKSG ELVLGWGDGC CREPREGEER EVRRIFNLRL DDEAQQRMRK  120
RVLQKLHLLF GGTDEDNYAL GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKHLWLS  180
DALTSNLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVI SIPESLELLH NIKSCFSSFL  240
SLVRAKQATG IAVVPEKKEG NNPHFSNSIA VTERPDGNPK IFGHDLNSGT HFREKLAVRK  300
AEERPWDMYQ NGNRMPFVNA RNGLHATSWV QFSNAKPGKP VEFYGPQTPA HNLVNGGRED  360
LPLNNFQHQN SAARMQIDFT GATSRPIVSP AQTIESEHSD VEASCKEDRA GLADEKRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ  480
KRLRDMESER ELRLGSTSRD GMASEDSPSS EIQIRGPDIN IEAANDEVIV RVSCPLESHP  540
ISRVIQTFKE AKINVVDSKL SAGNGTVYHT FVLKSSGSEQ LTKEKLLAAF SSESNSQRQL  600
SPVGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	416	424	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein