PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU08418.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 600aa MW: 67208.8 Da PI: 7.8225

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU08418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	37.6	3e-12	69	98	6	35
GATA 6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 + +TplWR+gp ++ LCnaCG ++r kg+ PHU08418.1 69 AADTPLWRNGPPEKPILCNACGSRWRTKGT 98 678******66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MLFSFSCTLI IVLFCSSSYC PSVRMLWHAF VSVLSWLLHS RCFDMLLLEP RFYRKQPLYL 60 PGLNHQNHAA DTPLWRNGPP EKPILCNACG SRWRTKGTLA NYTPLHARAE PCDSEDHRVS 120 RFKNISIKNK EAKVLKRKQS HDNADVGTPP DYNLGFRKVL DEDISNRSSS GSAISNSESC 180 AQFGSAEASD LTGPAQSNIW DTTVPSRKRT CFNRPKPSSV EKLTKDLYTI LHEQQSSYLS 240 ASSEEELLFE IDKPMVSVEI GHGSVLIRHP SSIGREEESE ASSLSVDNKH RSVSDAYSRL 300 TTPLVNISKG VNSPNMSTER TKKPTGPVME QDQIKRNKDH VEKLQILGHH NSALRYIDLK 360 DVLNYEEFTS HLSSDEQQQL LKYLPPVDSF APPDSLRTVF ESSQFEENLS SFQKLLAEGV 420 FDNSLLGVNL EDCRTLKRLI LCYLAKSKWV QQYNLLKDTK CKNNSSGSEV TGEPSVIATC 480 HSVNVKKPRE GQHLKYSGAK AAMKSPKRVV MKSIYEQKEL AASDGSCFNP RSSFTLPSEN 540 NSLMLDPFHS ANQNSDQDLL LDVPSNSCFP QAELLVPTSS FTTQASTSSS SMYPPHFVRP

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MLFSFSCTLI IVLFCSSSYC PSVRMLWHAF VSVLSWLLHS RCFDMLLLEP RFYRKQPLYL  60
PGLNHQNHAA DTPLWRNGPP EKPILCNACG SRWRTKGTLA NYTPLHARAE PCDSEDHRVS  120
RFKNISIKNK EAKVLKRKQS HDNADVGTPP DYNLGFRKVL DEDISNRSSS GSAISNSESC  180
AQFGSAEASD LTGPAQSNIW DTTVPSRKRT CFNRPKPSSV EKLTKDLYTI LHEQQSSYLS  240
ASSEEELLFE IDKPMVSVEI GHGSVLIRHP SSIGREEESE ASSLSVDNKH RSVSDAYSRL  300
TTPLVNISKG VNSPNMSTER TKKPTGPVME QDQIKRNKDH VEKLQILGHH NSALRYIDLK  360
DVLNYEEFTS HLSSDEQQQL LKYLPPVDSF APPDSLRTVF ESSQFEENLS SFQKLLAEGV  420
FDNSLLGVNL EDCRTLKRLI LCYLAKSKWV QQYNLLKDTK CKNNSSGSEV TGEPSVIATC  480
HSVNVKKPRE GQHLKYSGAK AAMKSPKRVV MKSIYEQKEL AASDGSCFNP RSSFTLPSEN  540
NSLMLDPFHS ANQNSDQDLL LDVPSNSCFP QAELLVPTSS FTTQASTSSS SMYPPHFVRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.2	1e-125	GATA family protein