PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU07673.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 376aa MW: 43253.5 Da PI: 9.4006

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU07673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.8	4.9e-35	178	274	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++r+kC++ Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++r++a++sl++eA +r++dPv G +g +++++++l+ k++ +++ PHU07673.1 178 ACASCKHQRKKCTDRCVLAPYFPAEKTREFKAVHKVFGVSNITKIVKNLREDDRRRAVESLIWEAFCRQKDPVLGPYGEYKRVHEELKLYKTQYQQI 274 7***************************************************************************************999987765 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MTHWKTTASS INSGENHNRI RLLLKRGKSV SIQVSIEILI LNILLFLTGL EFGSVRVIGA 60 QFRVGSDVVE VSIEILVPDI LLFLTGLEFE SVRVVGAQFR VGSDVVEVFI VREFGFRLHS 120 FVIFNQNLNL LRLDFYTRIW FSFEVPCSKS LLSSIVDVDI IIIAKHHLRM QKSSGTAACA 180 SCKHQRKKCT DRCVLAPYFP AEKTREFKAV HKVFGVSNIT KIVKNLREDD RRRAVESLIW 240 EAFCRQKDPV LGPYGEYKRV HEELKLYKTQ YQQILHQGSN NNNTDNNGMM YEATTQGLIN 300 GWNINTKRND NYINHENSIV ESWSSYNNKI INPLHHHVQN IEKLRTENSN GSIVVVPQQQ 360 AYNEFNQQYF LAGRYS

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MTHWKTTASS INSGENHNRI RLLLKRGKSV SIQVSIEILI LNILLFLTGL EFGSVRVIGA  60
QFRVGSDVVE VSIEILVPDI LLFLTGLEFE SVRVVGAQFR VGSDVVEVFI VREFGFRLHS  120
FVIFNQNLNL LRLDFYTRIW FSFEVPCSKS LLSSIVDVDI IIIAKHHLRM QKSSGTAACA  180
SCKHQRKKCT DRCVLAPYFP AEKTREFKAV HKVFGVSNIT KIVKNLREDD RRRAVESLIW  240
EAFCRQKDPV LGPYGEYKRV HEELKLYKTQ YQQILHQGSN NNNTDNNGMM YEATTQGLIN  300
GWNINTKRND NYINHENSIV ESWSSYNNKI INPLHHHVQN IEKLRTENSN GSIVVVPQQQ  360
AYNEFNQQYF LAGRYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-44	LBD family protein