PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06890.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 747aa    MW: 84532 Da    PI: 5.2841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.51.1e-1133747451374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+av+++d + a +lL+ +++++sp gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+   sP+ k+s ++ N
  PHU06890.1 374 LRTLLINCAQAVAADDSRVAYELLKLIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASSPFRKISSFASN 469
                 6789************************************************************999998...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I+  +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g   +e++eetg+rLa++A++++vpfe+++ +ak++e++++e+L++
  PHU06890.1 470 KTIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYARSFNVPFEYHA-IAKKWETITVEDLKL 567
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E laVn+ ++ ++l+de+ +++s r+ vL+l+++++P+++v++  +  ++s+ F++rf eal ++salfd+le+ +pre  er  +Ere++gre+ 
  PHU06890.1 568 DKDEFLAVNCLYRFKNLHDETIAVDSSRTIVLNLIRKINPDIFVHAIVNGAYSSPFFVTRFREALFHFSALFDMLETIVPREIPERGLIEREIFGREAL 666
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplseka.akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+aceg er+er et+++W++r+  a F+++p++ ++  ++a   +r ++ d + ++e+s++l+lgWk+r+++++S+W+
  PHU06890.1 667 NVIACEGWERVERPETYKQWQARILGARFTQIPFDREEfLNKAVEKVRLYHRD-FLIDEDSQWLLLGWKGRTIFALSCWK 745
                 **********************************8766156788889999955.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    
MDPSSLNSFQ LRDQSLPISS DQRMNNGPRF ELIYSDQNLL NDPRLENSFV QHKFGPVGFI  60
SGDHLPTNVE SRTDLGFEDG FSEDIDFSDA VLSYINRMLM EEDMEDKTDM LQESLELQAK  120
EKSFYEALGK KYPPSPEQNV FTDRNSYVTG SVYSSTSNTG DSSGYLADNI STEYNSSYIE  180
NLSNRDTSYS SVCSSNSGNT IVDGFLESPV SSFHILNIYD ESQSILNFQK GVEEASKFLP  240
TSYKLLNSVD VNDLPPRDPK GEAGFVDAQV KEKDEGETST TEARGKKNPL RGDNIIEEER  300
SSKQAAVFTE STLRSEEFDI VLLNSMGKGG EALEAYRQDL RNAKSKNTLQ MPKGSKGGKG  360
RGKKQGGTKE VIDLRTLLIN CAQAVAADDS RVAYELLKLI RQHSSPFGDG NQRLAHCFAD  420
GLEARLAGTG SQIYKALVNK RTSAADLLKA YHLYLASSPF RKISSFASNK TIMIKAENAT  480
RVHVIDFGIL YGFQWPTFIQ RIAEREGGPP KLRITGIEFP QPGFRPAERI EETGRRLADY  540
ARSFNVPFEY HAIAKKWETI TVEDLKLDKD EFLAVNCLYR FKNLHDETIA VDSSRTIVLN  600
LIRKINPDIF VHAIVNGAYS SPFFVTRFRE ALFHFSALFD MLETIVPREI PERGLIEREI  660
FGREALNVIA CEGWERVERP ETYKQWQARI LGARFTQIPF DREEFLNKAV EKVRLYHRDF  720
LIDEDSQWLL LGWKGRTIFA LSCWKPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein