PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06856.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 762aa    MW: 86367 Da    PI: 5.5904
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.8e-1123887591373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA+av+++d + a++lL++++++++p gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+   sP+ k+s ++ N
  PHU06856.1 388 LRTLLLNCAQAVAADDYRTANELLKQIRQHSTPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASSPFSKISSFASN 483
                 6789************************************************************999998...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 + I+  +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g   +e++eetg+rLa++A++++vpfe+++ +ak++e++++e+L++
  PHU06856.1 484 RSIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYAQSFNVPFEYHA-IAKKWETITVEDLNL 581
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++E laVn+ ++ ++l+de+v+++s r+ vL+l+++++P+++++   +  ++++ F++rf eal ++salfd+le+ +pre  er  +Ere++gre+ 
  PHU06856.1 582 GKDEFLAVNCLYRFKNLHDETVKVDSSRTVVLNLIREINPDIFIHGVVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERGLIEREIFGREAL 680
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nv+aceg er+er et+++W++r+  a F++++++ +  ++ a   +r  + + + ++e+s++l+lgWk+r+++++S+W
  PHU06856.1 681 NVIACEGWERVERPETYKQWQARILGARFTQIAFDREeFVNRAVEKVRLGYHRDFIIDEDSQWLLLGWKGRTVYAISCW 759
                 *********************************986515677888888888888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MDPRFNDHPS SLSNFRLGNQ YLPISLDQRM RNGPRCGLIY SDQMLLNGPR LENSFVQHNL  60
GAVGFISGDR LPTNVESRTN LGTEDDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES  120
LELQAKEKSF YEALGTKNPP SPHQNLFTDQ NSESPDDYVA GSIYNSTSNT IDSSSYLVDS  180
RAVNISKDYN SSCFKVPSFH DTSYSSVCSS NSGNIVDGFL DSPVCSFHIP DIYDESRSMW  240
NFHKGVEEAN KFLPTSNKLL NSVDINNLPP RELKTQAAYA AAQVEEKDEG EASPTEARGK  300
KNPQRDDNHI EEERCGKQAA VFTESTLRSE EFDIVLLHSM GKGEEALEAY RQDLRNAKCI  360
NTVQISKGSK GGKGRGKKQG RKKEVIDLRT LLLNCAQAVA ADDYRTANEL LKQIRQHSTP  420
FGDGNQRLAH CFADGLEARL AGTGSQIYKA LVNKRTSAAD LLKAYHLYLA SSPFSKISSF  480
ASNRSIMIKA ENATRVHVID FGILYGFQWP TFIQRIAERE GGPPKLRITG IEFPQPGFRP  540
AERIEETGRR LADYAQSFNV PFEYHAIAKK WETITVEDLN LGKDEFLAVN CLYRFKNLHD  600
ETVKVDSSRT VVLNLIREIN PDIFIHGVVN GAYSAPFFVT RFREALFHFS ALFDMLETIV  660
PREIPERGLI EREIFGREAL NVIACEGWER VERPETYKQW QARILGARFT QIAFDREEFV  720
NRAVEKVRLG YHRDFIIDED SQWLLLGWKG RTVYAISCWI PV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein