PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05536.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 415aa MW: 47978.6 Da PI: 7.8715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05536.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.3	2.1e-28	116	201	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+k+g+ +r ++ ++++yf+qlea PHU05536.1 116 RWPRQETLTLLEVRSQLDCKFKEANQKGPLWDEVSRIMsEEYGYQRSGKKCREKFENLYKYYKKTKDGKAGR--QDGKHYRYFRQLEA 201 8***********************************8889************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MEDHHYGMMD LTQYMNGRSL FASVQPHLTP DLLCGQHQHF ENMVMASSAM APQHDNCLPH 60 QHHHHHEFHP DSSTRAAATT RTSVSVGGGG VCALSALEME GVGGGGVHGG DGGNGRWPRQ 120 ETLTLLEVRS QLDCKFKEAN QKGPLWDEVS RIMSEEYGYQ RSGKKCREKF ENLYKYYKKT 180 KDGKAGRQDG KHYRYFRQLE ALYGKTGSTI DSSTFLHYNQ EAHQGPKLSD SLYDSSDSDA 240 TNLSDDENDS REKRKNKKRG KRSWKAKIRD FMDIQMRKLV EKQEFLLEKM MKTIEDKEKE 300 RILRQEEWRK QEAIRVEKQQ NFWANERAWI EARDAALIDA LHKLNGEEIM KSTTTNYNLN 360 DKNASMFYCN KKQKDMNSLS SSCYYNFQIK NEGRSYCETS RHVPNVHETM DDGLF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MEDHHYGMMD LTQYMNGRSL FASVQPHLTP DLLCGQHQHF ENMVMASSAM APQHDNCLPH  60
QHHHHHEFHP DSSTRAAATT RTSVSVGGGG VCALSALEME GVGGGGVHGG DGGNGRWPRQ  120
ETLTLLEVRS QLDCKFKEAN QKGPLWDEVS RIMSEEYGYQ RSGKKCREKF ENLYKYYKKT  180
KDGKAGRQDG KHYRYFRQLE ALYGKTGSTI DSSTFLHYNQ EAHQGPKLSD SLYDSSDSDA  240
TNLSDDENDS REKRKNKKRG KRSWKAKIRD FMDIQMRKLV EKQEFLLEKM MKTIEDKEKE  300
RILRQEEWRK QEAIRVEKQQ NFWANERAWI EARDAALIDA LHKLNGEEIM KSTTTNYNLN  360
DKNASMFYCN KKQKDMNSLS SSCYYNFQIK NEGRSYCETS RHVPNVHETM DDGLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	262	RKNKKRGKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-79	Trihelix family protein