PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05099.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 562aa MW: 62615.8 Da PI: 8.6777

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1.1e-10	45	83	9	48
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d+ l av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l PHU05099.1 45 DDTLRSAVAAYRGKSWKKIAEFFP-DRSEVQCLHRWQKVL 83 78999*****************.**********986 PP
2	Myb_DNA-binding	56.4	6.6e-18	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W+ Ia+ + gR +kqc++rw+++l PHU05099.1 89 KGPWTQEEDDKIIELVARYGPTKWSIIAKSLH-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	58.1	1.9e-18	141	184	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ lvda++ +G++ W+ Ia+ ++ gRt++ +k++w++ PHU05099.1 141 KDAWTLEEELALVDAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 184 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MLNGKILMRT TGPIRRAKGG WTPEEVIRFP DKNHLLIINS PMPQDDTLRS AVAAYRGKSW 60 KKIAEFFPDR SEVQCLHRWQ KVLNPDLVKG PWTQEEDDKI IELVARYGPT KWSIIAKSLH 120 GRIGKQCRER WHNHLNPNIK KDAWTLEEEL ALVDAHRIHG NKWAEIAKVL PGRTDNAIKN 180 HWNSSLKKKL DFYLATGNLP PVGRDGPQNG CENNIFTASA EKALVYSHKG SDSTELASSG 240 TTDICKIGNG GMNHQDAKLL VANIDASNSG PQNESTDSEV VRWEAQSPAI DGIHVKPITK 300 IKFDGYGTNS VVDLKVIETP FSCEIPTCGT LYYEPPQLGS CISMDSNYLN IRWAHSGPSP 360 SLSPSSFSTP PSSLKGSSYA QTPESILETA ARSFPNTPSI FRKRRLSSTT PGNKIGNADE 420 DMRKEEPCDT CEEKQVDSSE KYGMNRGSSS RNPAYNGIGP CNTRAFNASP PYRLRSKRKS 480 IFKSVEKKLK FAFDNEQHNT SNDSTIKEIS HVADCLRATK MGFMLESVFN PGIIRDTGCH 540 AVGFFVKPHQ LPEEFTLHIH LC

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MLNGKILMRT TGPIRRAKGG WTPEEVIRFP DKNHLLIINS PMPQDDTLRS AVAAYRGKSW  60
KKIAEFFPDR SEVQCLHRWQ KVLNPDLVKG PWTQEEDDKI IELVARYGPT KWSIIAKSLH  120
GRIGKQCRER WHNHLNPNIK KDAWTLEEEL ALVDAHRIHG NKWAEIAKVL PGRTDNAIKN  180
HWNSSLKKKL DFYLATGNLP PVGRDGPQNG CENNIFTASA EKALVYSHKG SDSTELASSG  240
TTDICKIGNG GMNHQDAKLL VANIDASNSG PQNESTDSEV VRWEAQSPAI DGIHVKPITK  300
IKFDGYGTNS VVDLKVIETP FSCEIPTCGT LYYEPPQLGS CISMDSNYLN IRWAHSGPSP  360
SLSPSSFSTP PSSLKGSSYA QTPESILETA ARSFPNTPSI FRKRRLSSTT PGNKIGNADE  420
DMRKEEPCDT CEEKQVDSSE KYGMNRGSSS RNPAYNGIGP CNTRAFNASP PYRLRSKRKS  480
IFKSVEKKLK FAFDNEQHNT SNDSTIKEIS HVADCLRATK MGFMLESVFN PGIIRDTGCH  540
AVGFFVKPHQ LPEEFTLHIH LC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	477	490	KRKSIFKSVEKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-124	MYB family protein