PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU04888.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 350aa MW: 39416.5 Da PI: 7.6662

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU04888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.8e-06	2	24	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC+ffa G C Gd C F+H+ PHU04888.1 2 RVLCKFFAH-GACLKGDHCEFSHD 24 78*6666.***********5 PP
2	zf-CCCH	27.3	6.1e-09	32	52	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ PHU04888.1 32 VCTYYQK-GACAYGSRCRYDHV 52 5****.***********7 PP
3	zf-CCCH	17.4	8.2e-06	132	154	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C fa++G C++G+ C+ +Hg PHU04888.1 132 RSICA-FAAGGNCPRGEECPHIHG 154 56788.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
SRVLCKFFAH GACLKGDHCE FSHDWNNPAN NVCTYYQKGA CAYGSRCRYD HVKPSRSQPS 60 AQFSASSAPS NMPPGMHAHN AVVVSAISTE VLASNKPYDT SSRPAWNQKS ELQDALEIDD 120 TIEFNIVNPA DRSICAFAAG GNCPRGEECP HIHGDLCPTC GKHCLHPFRP QEREEHMKTC 180 ENKQKHLDLL KRSQEIECSV CLERVLSKST ATERKFGILS ECDHPFCVSC IRNWRGSSSS 240 GMDVNSALRA CPICRKLSYF VIPSVIWYFT KEEKEEIADN YKNKLRSIDC KHFDFGNGTC 300 PFGTSCFYKH QHRDGRLEEV VLRHLGSEDG STVIAKNIRL SDFLRNLEIR

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

SRVLCKFFAH GACLKGDHCE FSHDWNNPAN NVCTYYQKGA CAYGSRCRYD HVKPSRSQPS  60
AQFSASSAPS NMPPGMHAHN AVVVSAISTE VLASNKPYDT SSRPAWNQKS ELQDALEIDD  120
TIEFNIVNPA DRSICAFAAG GNCPRGEECP HIHGDLCPTC GKHCLHPFRP QEREEHMKTC  180
ENKQKHLDLL KRSQEIECSV CLERVLSKST ATERKFGILS ECDHPFCVSC IRNWRGSSSS  240
GMDVNSALRA CPICRKLSYF VIPSVIWYFT KEEKEEIADN YKNKLRSIDC KHFDFGNGTC  300
PFGTSCFYKH QHRDGRLEEV VLRHLGSEDG STVIAKNIRL SDFLRNLEIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-151	C3H family protein