PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03870.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 661aa MW: 73446.2 Da PI: 7.4829

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.2	7.5e-24	113	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++el PHU03870.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGEL 207 89**************************997556555..8********************************************..4499999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PHU03870.1 208 CLGIRRA 214 **996 PP
2	Auxin_resp	116.7	2e-38	271	354	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Pra t+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp+rWpnS+Wr+L+ PHU03870.1 271 AAYLAASGQPFEVVYYPRANTPEFCVKASSVNAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIRWPNSPWRLLQ 354 577899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MKEVLEKCVD SQLWHACAGG MVQVPAVNSK VYYFPQGHAE HALTNVDFSG IPRSPALILC 60 RVAAVRFLAD PETDEVYARI RAVPVGNKGN DYDDDDDILG SNESGTAEKP NSFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT 180 GWSTFVNQKK LVAGDSIVFL RAENGELCLG IRRAKRGGSG GPETPSGWNS ASGNYGGFSA 240 FLREDMNKNG NLSAGSFRGK GRVRPESVVE AAYLAASGQP FEVVYYPRAN TPEFCVKASS 300 VNAAMRIQWC SGMRFKMAFE TEDSSRISWF MGTISSIQVA DPIRWPNSPW RLLQVSWDEP 360 DLLQNVKHVS PWLVELVSNM PVIHLSPFSP PRKKLRLPPD FSLDNQFTLP SFSGNPLRSS 420 SPFCCPSDNI TAGIQGARHA QFGVPLLDLH LSNNVQSGQL APSFQRVVAD SQCSNVINKY 480 QNDRNDNISC LLTIGTSSKI SEKKDSVITP RFLLFGQPIL TEQQISSRCS VNAPEVQSRK 540 DLGRIQLKRE RFPPEQISSA AFFWNRGYHA AELGVNTGHC KVFLESEDVG HTLDLSVLGS 600 YEELYRRLAY MFGLERLDML TRVLYHDATG AVKHTGDEPF RCLIFSMVVY MCESTHCLFE 660 I

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MKEVLEKCVD SQLWHACAGG MVQVPAVNSK VYYFPQGHAE HALTNVDFSG IPRSPALILC  60
RVAAVRFLAD PETDEVYARI RAVPVGNKGN DYDDDDDILG SNESGTAEKP NSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAENGELCLG IRRAKRGGSG GPETPSGWNS ASGNYGGFSA  240
FLREDMNKNG NLSAGSFRGK GRVRPESVVE AAYLAASGQP FEVVYYPRAN TPEFCVKASS  300
VNAAMRIQWC SGMRFKMAFE TEDSSRISWF MGTISSIQVA DPIRWPNSPW RLLQVSWDEP  360
DLLQNVKHVS PWLVELVSNM PVIHLSPFSP PRKKLRLPPD FSLDNQFTLP SFSGNPLRSS  420
SPFCCPSDNI TAGIQGARHA QFGVPLLDLH LSNNVQSGQL APSFQRVVAD SQCSNVINKY  480
QNDRNDNISC LLTIGTSSKI SEKKDSVITP RFLLFGQPIL TEQQISSRCS VNAPEVQSRK  540
DLGRIQLKRE RFPPEQISSA AFFWNRGYHA AELGVNTGHC KVFLESEDVG HTLDLSVLGS  600
YEELYRRLAY MFGLERLDML TRVLYHDATG AVKHTGDEPF RCLIFSMVVY MCESTHCLFE  660
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein