PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03143.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 347aa MW: 37052.4 Da PI: 8.3121

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214.8	2e-66	141	304	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskke 99 + + dCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++ a+++ + a+ +++++k++r +s++++++s+t++s+++++++ PHU03143.1 141 GNNNIDCGNQAKKDCTHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMAGATTNVNVAAGsssqSTSSAKKPRLVNSQTTTTASHTSTSNNTPPRS 239 55667*****************************************988877665544333344577788899999999999*********** PP DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++tss lP +v+++avf+cvrv+svd+ge+e+aYq+av igGhvfkG+LydqGl+e PHU03143.1 240 FDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDEGEDEYAYQAAVRIGGHVFKGFLYDQGLDE 304 999*******************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MWSASSSRQM QINYGLQPEM GMFVVHPASF HHHHHNQEST INFDPHHHHQ SINVTSNLSN 60 TSATNTSLGV GVGVGVIPLL TATPLPNMVS FDDQDLVSRN RGGNDGSGFQ FFSNQQPQNS 120 TNYTKNSTSN ILGGGSGNIG GNNNIDCGNQ AKKDCTHRRC RTCCKSRGFD CTTHVKSTWV 180 PAARRRERQL MAGATTNVNV AAGSSSQSTS SAKKPRLVNS QTTTTASHTS TSNNTPPRSF 240 DTSSSHQDAS FKASLPGQVR APAVFKCVRV TSVDEGEDEY AYQAAVRIGG HVFKGFLYDQ 300 GLDEGKNNNN FPNLSDLHLG GGNGNEPSDL YATSTGGGLL GGSNYGN

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MWSASSSRQM QINYGLQPEM GMFVVHPASF HHHHHNQEST INFDPHHHHQ SINVTSNLSN  60
TSATNTSLGV GVGVGVIPLL TATPLPNMVS FDDQDLVSRN RGGNDGSGFQ FFSNQQPQNS  120
TNYTKNSTSN ILGGGSGNIG GNNNIDCGNQ AKKDCTHRRC RTCCKSRGFD CTTHVKSTWV  180
PAARRRERQL MAGATTNVNV AAGSSSQSTS SAKKPRLVNS QTTTTASHTS TSNNTPPRSF  240
DTSSSHQDAS FKASLPGQVR APAVFKCVRV TSVDEGEDEY AYQAAVRIGG HVFKGFLYDQ  300
GLDEGKNNNN FPNLSDLHLG GGNGNEPSDL YATSTGGGLL GGSNYGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	6e-63	SRS family protein