PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03054.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 315aa MW: 34356.2 Da PI: 8.0194

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	86.3	3.8e-27	17	95	2	78
-SSTT-----TT--HHHHHTT--HHHHT-..S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhska..pvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCe + sg+++r +fh+l+efD++krsCr+rL++hn+rrrk+q+ PHU03054.1 17 CLVDGCNADLSRCREYHRRHKVCEPSDSHilGSSKESGIHERLSIINMKFHSLDEFDDGKRSCRKRLDGHNRRRRKPQP 95 *********************976543115667899************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MESSSKRAKA PGNITHCLVD GCNADLSRCR EYHRRHKVCE PSDSHILGSS KESGIHERLS 60 IINMKFHSLD EFDDGKRSCR KRLDGHNRRR RKPQPDSMAK NSGLLNGQQG TKLLSFSSQQ 120 IFPSAVVSST WAGVVKTDSD MVLYNNQSHI NCMDSQNSFA HSSAHSYKGG SQLQFLQGIG 180 RSLPEASSIC QPLLDHPTSA AGISSSGQKI FCSGLSEVDS DRALSLLSSA PAVTREIGLS 240 NMVQQPASIP CPRSHGLHYG GLSHFPFAQD FNSKPQDSHV SNSSSPLHFH EMLQNAQDGS 300 STSDGSQQTL AFMWD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	93	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-34	SBP family protein