PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03012.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 469aa MW: 51727.9 Da PI: 7.115

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.3	5.4e-07	11	44	3	36
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 r C+ ++++ ++l+C+ + lC C + H+ PHU03012.1 11 SRPCDFCNQEIAILYCRADTAKLCIFCDQLVHSA 44 678**************************99954 PP
2	zf-B_box	22.8	1.9e-07	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++++++++ C +++ lC++C H + H++ p PHU03012.1 54 SQICDNCGSEPVSIRCATDNLVLCRECDWDAHGScavsgtHDRNP 98 579*************************99994488888887766 PP
3	CCT	62.2	1.6e-21	422	464	2	44
CCT 2 eaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ PHU03012.1 422 GYAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 464 5689*************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MNSDLRSSGE SRPCDFCNQE IAILYCRADT AKLCIFCDQL VHSANALSKK HLRSQICDNC 60 GSEPVSIRCA TDNLVLCREC DWDAHGSCAV SGTHDRNPVE GFSGCPSASD LASAWGLDIE 120 AKKRPHKQPT CPSWMSKDAP PPSILLQDLM VPSVNNSGIY SITASSREVG RKQTPTCGKQ 180 KQVILKQLTE LFKRDLADGV GAGAEDLVLK TPNDSSDWQG NVNVMDGSDA VMVGVAQKLE 240 QQQPQNVPFN SLIIPHNPKD SDQVVERNSL WSENSYDQNT QIWDFNLGQL RSHEQSRSLE 300 ADYSESDMAY MMKSYDELIR GTSLASSKGL GFSGINCSAA HDDMTAFSNN SNNRAASQGP 360 ATSESNNLPR IKNSSDSGYV KPKCCGVSTD LNFMDQSIVV GGENSCAETL KADMELMAKN 420 RGYAMQRYKE KKKTRRYDKH IRYESRKARA DTRKRVKGRF VKANEAPDC

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MNSDLRSSGE SRPCDFCNQE IAILYCRADT AKLCIFCDQL VHSANALSKK HLRSQICDNC  60
GSEPVSIRCA TDNLVLCREC DWDAHGSCAV SGTHDRNPVE GFSGCPSASD LASAWGLDIE  120
AKKRPHKQPT CPSWMSKDAP PPSILLQDLM VPSVNNSGIY SITASSREVG RKQTPTCGKQ  180
KQVILKQLTE LFKRDLADGV GAGAEDLVLK TPNDSSDWQG NVNVMDGSDA VMVGVAQKLE  240
QQQPQNVPFN SLIIPHNPKD SDQVVERNSL WSENSYDQNT QIWDFNLGQL RSHEQSRSLE  300
ADYSESDMAY MMKSYDELIR GTSLASSKGL GFSGINCSAA HDDMTAFSNN SNNRAASQGP  360
ATSESNNLPR IKNSSDSGYV KPKCCGVSTD LNFMDQSIVV GGENSCAETL KADMELMAKN  420
RGYAMQRYKE KKKTRRYDKH IRYESRKARA DTRKRVKGRF VKANEAPDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-96	CO-like family protein