PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02485.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 345aa MW: 39348.5 Da PI: 8.6296

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + ++G g+W++ +++ g+ R++k+c++rw +yl PHU02485.1 14 KGPWTAEEDQKLLSFIDKHGCGSWRALPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	46.5	8.4e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ +++++++lG++ W++Ia +++ Rt++++k++w++ PHU02485.1 67 RGKFSLQEERTIIHLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGKSKCSDKE GLKKGPWTAE EDQKLLSFID KHGCGSWRAL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPSRT DNEIKNYWNS RLKKRLTKMG 120 IDPMTHKPKV TNNLNGVASS KYVATLSHMA EWESARLEAE ARLVRKSKDY EILFNNNNYN 180 INRSTISQQL PYYQLPCLDI LKAWQMSSTK LPTINDISAI LLNNSRNNNL ESSIPSTLHS 240 SETLFVNNNV PTTTTTTNVR DDHQIPPNLS TIESCFEDDQ LQTDLPSFMQ EFSGLFPEYY 300 TQNSTNIQVD NLMGSCSGDF EDNKLINWNN FPNYLVNSPI GSPVF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGKSKCSDKE GLKKGPWTAE EDQKLLSFID KHGCGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPSRT DNEIKNYWNS RLKKRLTKMG  120
IDPMTHKPKV TNNLNGVASS KYVATLSHMA EWESARLEAE ARLVRKSKDY EILFNNNNYN  180
INRSTISQQL PYYQLPCLDI LKAWQMSSTK LPTINDISAI LLNNSRNNNL ESSIPSTLHS  240
SETLFVNNNV PTTTTTTNVR DDHQIPPNLS TIESCFEDDQ LQTDLPSFMQ EFSGLFPEYY  300
TQNSTNIQVD NLMGSCSGDF EDNKLINWNN FPNYLVNSPI GSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.2	6e-92	MYB family protein