PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02390.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 497aa MW: 55958.3 Da PI: 8.3803

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	430	452	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H PHU02390.1 430 HECPFCDRVFKSGQALGGHKRSH 452 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MRSHVLNNSD EFEEKLESWS ARENSHQSKF DLGGNSGYGL RENPKKTWRA VDSTSANLLP 60 QEKVCQQCGK VFQSLKALCG HMACHSEKLV LRSRLSSKTK RYKRIVVKSS NNYRLVNNNS 120 SVNVNCNGSS SVSEIDENDQ EEVAKCLMML SRDSANWNGV NSVVESSDNN SVVLETKSSS 180 TDMRLGRKDR LKCVYNQDET PGTKKREERK VKLSGNLGGE AEYESSDDSG YFLDENTIVE 240 SDISVDGFHR NGNSKWSTTR MSNAVWCDES RIDKRKGLNR TKKYPIESRK DLNDDCGFDD 300 YPIAAYMDKC EPRKRTKDSS YHPELGNKSF KKIKLGPKSP EGCKNVEKKY ECLNCKKSFN 360 SFQALGGHRP CHKKANAYLE SLNGTGESSL DADCDDKHRE TSSSKKTASA AKDLSYNPEK 420 KIKLKKSKGH ECPFCDRVFK SGQALGGHKR SHFIVGTEQN MNRSSAVKKE VDDLLDLNLP 480 APVDDEYDDE HAHLVSW

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MRSHVLNNSD EFEEKLESWS ARENSHQSKF DLGGNSGYGL RENPKKTWRA VDSTSANLLP  60
QEKVCQQCGK VFQSLKALCG HMACHSEKLV LRSRLSSKTK RYKRIVVKSS NNYRLVNNNS  120
SVNVNCNGSS SVSEIDENDQ EEVAKCLMML SRDSANWNGV NSVVESSDNN SVVLETKSSS  180
TDMRLGRKDR LKCVYNQDET PGTKKREERK VKLSGNLGGE AEYESSDDSG YFLDENTIVE  240
SDISVDGFHR NGNSKWSTTR MSNAVWCDES RIDKRKGLNR TKKYPIESRK DLNDDCGFDD  300
YPIAAYMDKC EPRKRTKDSS YHPELGNKSF KKIKLGPKSP EGCKNVEKKY ECLNCKKSFN  360
SFQALGGHRP CHKKANAYLE SLNGTGESSL DADCDDKHRE TSSSKKTASA AKDLSYNPEK  420
KIKLKKSKGH ECPFCDRVFK SGQALGGHKR SHFIVGTEQN MNRSSAVKKE VDDLLDLNLP  480
APVDDEYDDE HAHLVSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	212	KREERKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-40	C2H2 family protein