PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU01922.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 457aa MW: 51959 Da PI: 5.0236

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU01922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29	2.2e-09	17	57	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r C+++ +k+++++C ++ +lC++C + H+ H+ PHU01922.1 17 RACDNCIKKRARWYCPADDAFLCQNCDASVHSAnplahrHE 57 78****************************96688994444 PP
2	CCT	67.5	3.6e-23	412	455	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a PHU01922.1 412 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 455 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MVSERKLASA MGGKTLRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLAHRHERVR 60 LKTSSLKEPS SSLDDYLPDL ESPVSVSSVS VSVSVPSWHR GFTRKARTPR HGRKASKSAG 120 DGDVILMKNP IHIVPEMLSD ENSHDEIEEE QLLYRVPILD PFVAELCSSA TNNQEMVENS 180 TTAAAAAETD SEFKVESKET ALQDDICNVD LNRFHGVLPS EMELAEFAAD VENLLGKGLD 240 DHESFDMEGL GLLEVCNDNK EENSMECSMV SHEKVKIEDE GEVEFVTKTT SATTHYDHQF 300 DHSTHHDIDS NGDTFEFKFD YDSPMNIRRE DEVVMKNIRE DNNVAIDDEN QINKKILLNL 360 DYEGVLTAWA DQRSPWTNGE RPELDTNDSW PGCMGNYMGI MNENAIIVDR GREARVSRYR 420 EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRANF

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MVSERKLASA MGGKTLRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLAHRHERVR  60
LKTSSLKEPS SSLDDYLPDL ESPVSVSSVS VSVSVPSWHR GFTRKARTPR HGRKASKSAG  120
DGDVILMKNP IHIVPEMLSD ENSHDEIEEE QLLYRVPILD PFVAELCSSA TNNQEMVENS  180
TTAAAAAETD SEFKVESKET ALQDDICNVD LNRFHGVLPS EMELAEFAAD VENLLGKGLD  240
DHESFDMEGL GLLEVCNDNK EENSMECSMV SHEKVKIEDE GEVEFVTKTT SATTHYDHQF  300
DHSTHHDIDS NGDTFEFKFD YDSPMNIRRE DEVVMKNIRE DNNVAIDDEN QINKKILLNL  360
DYEGVLTAWA DQRSPWTNGE RPELDTNDSW PGCMGNYMGI MNENAIIVDR GREARVSRYR  420
EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRANF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	423	439	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-92	CO-like family protein