PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU01897.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 349aa    MW: 38992.7 Da    PI: 7.1695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU01897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.26.4e-14265290126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++t  C+yGd+C+FaHg
  PHU01897.1 265 FKTELCNKWQETAACPYGDNCQFAHG 290
                 79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MNREISTAAG HGGAFSYDNE LSQPTAFDLS SLYSSMLLHP TGLLLDDSQN STETTVTPVL  60
TPRFRQSQSS NQLLIDQHYQ QDLMDRHNRV LSQLLETEKK TLALRQENIN LKMANFNLNN  120
RLSSLLSDYG PSSGLGLDNG LLRDYGPSSG LGLNNGLRRM HVGLEEEMSS DGHSWEDVVA  180
DRHLSPTSVM DSGRVEGVDR VLLPKSISVR SSGYLKTIHA AGGSSKQQNR AKASSVNTAQ  240
RVYVKGGNEK EEQPLELDVY NQGMFKTELC NKWQETAACP YGDNCQFAHG IEELRPVLRH  300
PRYKTEVCRM VLNGDPCPYG HRCHFRHTLT DQEKLMRSLN TTRSLSLKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-61C3H family protein