PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU01001.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 664aa MW: 73656.5 Da PI: 6.9303

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU01001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.2	1.1e-28	68	151	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW +qe+l L+++r++m+ +++++lk+plWeevs+km++ g++rs+k+Ckek+en+ k+++++keg+ ++ + +t+++fdql+ PHU01001.1 68 RWHRQETLSLLKIRSDMDVVFKDSSLKGPLWEEVSRKMADLGYHRSAKKCKEKFENVYKYHRRTKEGRASK--ADGKTYRFFDQLQ 151 8******************************************************************96..66678****98 PP
2	trihelix	100.9	1e-31	465	550	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi +r+ ++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea PHU01001.1 465 RWPKEEIDALISLRTCLDLKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFNQLEA 550 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MLGVSSTSTT PGRAVISAAP PLLPPPSQDA PESGGSSEGG GGDGGGGDMG VGGGGFSEEG 60 ERNSAGNRWH RQETLSLLKI RSDMDVVFKD SSLKGPLWEE VSRKMADLGY HRSAKKCKEK 120 FENVYKYHRR TKEGRASKAD GKTYRFFDQL QALENNPASH SLAPPPLAAP PITMAMAMPM 180 RSGNASVNPS PVPMPQNNAA SSPQSLPFVV SHNNVVTAAV PAVNHPMMPA LLLSQPQQQS 240 QPAIQQPMAN LNQINQPQGN TTTSFLSNST SSSSTSSDED IQRRHMKKRK WKDFFERLMK 300 DVIKKQEELQ KKFMETLEKR ERDRMVREET WRVQEMARLN REHDLLVQER SMAAAKDATI 360 IAFLQKITEQ QNTPILNSNT INTSPTQMQS KLPKKPSVAP PHSQSPQTPQ PQPPPAIAVS 420 LPMTIHTPVP TPTPQTMSLP VATKSFETPK TDNGGENFSP ESSSRWPKEE IDALISLRTC 480 LDLKYQENGP KGPLWEEISA GMRKLGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPEDSK 540 TCPYFNQLEA LYKEKSKNET VPNTAVFGLR PENSTPIAPI MAQPEQQWPL PQIQPQVQQQ 600 GSTNCNNQHH HDNHESDSMD HNEDEDDIEE DEDDEDEGDG YEIVTNKQPS SIAAATVTTT 660 ATAV

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MLGVSSTSTT PGRAVISAAP PLLPPPSQDA PESGGSSEGG GGDGGGGDMG VGGGGFSEEG  60
ERNSAGNRWH RQETLSLLKI RSDMDVVFKD SSLKGPLWEE VSRKMADLGY HRSAKKCKEK  120
FENVYKYHRR TKEGRASKAD GKTYRFFDQL QALENNPASH SLAPPPLAAP PITMAMAMPM  180
RSGNASVNPS PVPMPQNNAA SSPQSLPFVV SHNNVVTAAV PAVNHPMMPA LLLSQPQQQS  240
QPAIQQPMAN LNQINQPQGN TTTSFLSNST SSSSTSSDED IQRRHMKKRK WKDFFERLMK  300
DVIKKQEELQ KKFMETLEKR ERDRMVREET WRVQEMARLN REHDLLVQER SMAAAKDATI  360
IAFLQKITEQ QNTPILNSNT INTSPTQMQS KLPKKPSVAP PHSQSPQTPQ PQPPPAIAVS  420
LPMTIHTPVP TPTPQTMSLP VATKSFETPK TDNGGENFSP ESSSRWPKEE IDALISLRTC  480
LDLKYQENGP KGPLWEEISA GMRKLGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPEDSK  540
TCPYFNQLEA LYKEKSKNET VPNTAVFGLR PENSTPIAPI MAQPEQQWPL PQIQPQVQQQ  600
GSTNCNNQHH HDNHESDSMD HNEDEDDIEE DEDDEDEGDG YEIVTNKQPS SIAAATVTTT  660
ATAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	290	QRRHMKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-91	Trihelix family protein