PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU00460.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 495aa    MW: 56746.9 Da    PI: 4.7709
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU00460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS222.12.8e-681074443344
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 +lLl  Aea+++++l la+ ++ rl+++ s++ +    p++Rla yft++L  + ++  ++  + l  +++ +++ s++++a+++++e+sP++kf+h+t
  PHU00460.1 107 DLLLMGAEAIEARNLDLASIVVLRLNTILSNQENkensPIERLALYFTQGLLCKTLN--NSSPHELLNQNQYQTEFSSSMTAFQMLQEISPYVKFAHFT 203
                 789999********************996666644566************9877776..23333344444445678999999***************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R +   slRiT+++  +++++  +++tg+rL++fA+++++pf f+ ++ +     ++e+++v
  PHU00460.1 204 ANQAILEATQGSQQVHILDFDIMEGIQWPPLMVDLVERGNRNSSLRITALVI-DKTNSFYVKKTGKRLQEFADSINLPFMFDQVLLE-----DFEKIQV 296
                 **************************************************99.67899************************98443.....4577788 PP

        GRAS 197 kp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErel 289
                  + + +l+ n++++  +++++  sl +   ++ + +++lsPk+v +ve+e    ++  s sF+e f+eal++y+++ ds+  +++     + +++E+e+
  PHU00460.1 297 VEgHNNLIANVMIHQIYMPQRGSSLVK---TFFNGLRKLSPKLVALVEEElfnlTKIPSLSFVEFFCEALHHYTTISDSILGGFGGGYkLALRVIEKEF 392
                 887999*******99999988888888...********************7554444677********************6666665538999****** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkv 344
                 l+ +i + + +   ++ er+    kW+e l +  GF+++p+s++++ qak+l+   
  PHU00460.1 393 LRVRILDSLRQFPCDKLERE----KWSEGLYTlKGFRQIPMSSSNVRQAKHLITYQ 444
                 ************99966665....6***997758*****************99755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MELENFQPSY INPFLEYNNL DTTFSWKNPS INPQCSIQDF VTVVNDVDIL DYFPKDFDFI  60
DGDVDIPLQN VVHGDTEFLI EDQKSRVCNL HLKFVKDQLM EETGVTDLLL MGAEAIEARN  120
LDLASIVVLR LNTILSNQEN KENSPIERLA LYFTQGLLCK TLNNSSPHEL LNQNQYQTEF  180
SSSMTAFQML QEISPYVKFA HFTANQAILE ATQGSQQVHI LDFDIMEGIQ WPPLMVDLVE  240
RGNRNSSLRI TALVIDKTNS FYVKKTGKRL QEFADSINLP FMFDQVLLED FEKIQVVEGH  300
NNLIANVMIH QIYMPQRGSS LVKTFFNGLR KLSPKLVALV EEELFNLTKI PSLSFVEFFC  360
EALHHYTTIS DSILGGFGGG YKLALRVIEK EFLRVRILDS LRQFPCDKLE REKWSEGLYT  420
LKGFRQIPMS SSNVRQAKHL ITYQDKATQT DIIEEDTLEK IFNTLTTLSM KVDSMGNEIE  480
KLKTNEVKLK SIATN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-40GRAS family protein