PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00189.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 494aa MW: 56059.4 Da PI: 4.6134

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.9	1.3e-18	20	69	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i+n+ r+vt+skRr g++KKA+EL++L++ae+ v++ s ++ +l+++ PHU00189.1 20 KPIDNQNSRHVTLSKRRLGLFKKASELCILTGAEIVVLVSSlKRRRLFTF 69 68*************************************99344566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MNVNTNIVKK TQGRRKIAIK PIDNQNSRHV TLSKRRLGLF KKASELCILT GAEIVVLVSS 60 LKRRRLFTFG HPSADVVIDR YVTGISSSSF SSSTTDEFNL QQNNQYYSHM CEDLEAEKKK 120 KENIEEEKLV NIDDNNNGGY WWNEPIDTKG IDELEEFMVA LENLKKNVTT RVDELSMLNG 180 SSSSNSTMKI AGFGAEDQFL NQFLKRQRLF TFGHPSAYAV IDRYVTGISS STLSSSTTDE 240 FNLQQNNQYY SHMCKDLEAE KKKKENIEEE KLVNIDDNNN GGYWWNEPID TKGIDELEEF 300 MVALKNLKRN VTTRVDELSM LNGSSSSNST MKIARFGAED QFLNQRLPNA GNGDLLPRCL 360 SAYFEDKLVE RSFEGPINSS EPPPPPPRPA VDDDFSDYEN DGDDPINTEN DCMHMEDISS 420 DSQDDDEDHG MGSQPVYFFT DGTNFYISTR ERDMWKGRCG YCIQALQGIL PVILKHRQEV 480 ECGLIIGEVK TLAF

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MNVNTNIVKK TQGRRKIAIK PIDNQNSRHV TLSKRRLGLF KKASELCILT GAEIVVLVSS  60
LKRRRLFTFG HPSADVVIDR YVTGISSSSF SSSTTDEFNL QQNNQYYSHM CEDLEAEKKK  120
KENIEEEKLV NIDDNNNGGY WWNEPIDTKG IDELEEFMVA LENLKKNVTT RVDELSMLNG  180
SSSSNSTMKI AGFGAEDQFL NQFLKRQRLF TFGHPSAYAV IDRYVTGISS STLSSSTTDE  240
FNLQQNNQYY SHMCKDLEAE KKKKENIEEE KLVNIDDNNN GGYWWNEPID TKGIDELEEF  300
MVALKNLKRN VTTRVDELSM LNGSSSSNST MKIARFGAED QFLNQRLPNA GNGDLLPRCL  360
SAYFEDKLVE RSFEGPINSS EPPPPPPRPA VDDDFSDYEN DGDDPINTEN DCMHMEDISS  420
DSQDDDEDHG MGSQPVYFFT DGTNFYISTR ERDMWKGRCG YCIQALQGIL PVILKHRQEV  480
ECGLIIGEVK TLAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	66	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-25	M-type_MADS family protein