PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU00187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 480aa MW: 54084.2 Da PI: 8.9863 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.8e-20 | 276 | 325 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i+n+ nr+vtfskRr g++KKA+EL++L++ae+ +++ s ++++l+++ PHU00187.1 276 KPIDNQNNRHVTFSKRRLGLFKKASELCILTGAEIVILVQSlKRQRLFTF 325 68*************************************99567888888 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence |
MCDSFLSWCV CPTEWDLPTL RTEVCPVFYR DLPTLSLNSG PHQQGRQRSG SKTILSRPGP 60 RDDKGAALRP YCHDPARGLR FAPPNRDSPT LSFAPPNGIC LYSGLRFAPP NRDSPTLSLN 120 SGPHRQGRHR SGVKKKKQEN SQIDVKTNRE FMSLGKPKTE ASLRKLKNGT PISNFSLVSR 180 QEHFSGNTLY STKAQFCDSG NIHDVLIRCS GESEGLKHPV LSVYIDKKMV TRVKRLQWNF 240 RGNQSIFVDG LLVDLMWDVH DWFFNPPSGR RKIAIKPIDN QNNRHVTFSK RRLGLFKKAS 300 ELCILTGAEI VILVQSLKRQ RLFTFGHPSA DAVIDCYVTG ISSSSLSSST TDEFNLQQNN 360 QYYSHMCKDL EAEKKKKENI EEEKLVNIDG NNNGGYWWNE PIDTKGIDEL EEFMVALENL 420 KKNVTIRVDQ LSGLNGSSSS NSTLKIARFG VEDQFLNQIA IDYCSSIVPY ELNNSGDGQF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-23 | M-type_MADS family protein |