PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00035.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 364aa MW: 41317.9 Da PI: 6.6978

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	162	213	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ PHU00035.1 162 QRMTHIAVERNRRRQMNDYLAILRSLMPPS---YAQRGDQASIVGGAINFVKELE 213 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MALETVVFQQ DPFSYSHKDC TNFYNLENFH DFDHFGFDHG YNWNSPNSSI AQPYHNNNNS 60 SADKFTSSSI AQSYNTNTNT SADRFTSSSI AQSYNTNNNT SADRFTSSSI AQSYNNNNNS 120 SPEACTGLFP MEYFHEESTM VSGRRKRRRT KCAKNKEEIE NQRMTHIAVE RNRRRQMNDY 180 LAILRSLMPP SYAQRGDQAS IVGGAINFVK ELEQLLQFLE GHKQVTTKNQ QHSQCNPFSD 240 FFTFPQYSTG ADQPLAAATT NEGSIMMEEI RRSAAADIEV TMVESHANVK VLSRRRPKQL 300 LKIVNWLQAM CLTILHLSVT TADHMVFYTF SVKVEDNCQL NTVSEIASAV HEMVAMIKEE 360 AMSC

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MALETVVFQQ DPFSYSHKDC TNFYNLENFH DFDHFGFDHG YNWNSPNSSI AQPYHNNNNS  60
SADKFTSSSI AQSYNTNTNT SADRFTSSSI AQSYNTNNNT SADRFTSSSI AQSYNNNNNS  120
SPEACTGLFP MEYFHEESTM VSGRRKRRRT KCAKNKEEIE NQRMTHIAVE RNRRRQMNDY  180
LAILRSLMPP SYAQRGDQAS IVGGAINFVK ELEQLLQFLE GHKQVTTKNQ QHSQCNPFSD  240
FFTFPQYSTG ADQPLAAATT NEGSIMMEEI RRSAAADIEV TMVESHANVK VLSRRRPKQL  300
LKIVNWLQAM CLTILHLSVT TADHMVFYTF SVKVEDNCQL NTVSEIASAV HEMVAMIKEE  360
AMSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	149	RKRRR
2	145	150	RKRRRT
3	163	174	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	9e-81	bHLH family protein