PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99442.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 486aa MW: 53882.8 Da PI: 6.8506

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l ++v+++G g+W+++ r g+ R++k+c++rw ++l PHT99442.1 25 KGPWTTTEDTILMEYVRKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 72 79******************************************9986 PP
2	Myb_DNA-binding	48.1	2.8e-15	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++++ G++ W++ a+ ++ gRt++++k++w++ PHT99442.1 78 KGAFSPEEERIIIELHAKIGNK-WARMAAQLP-GRTDNEIKNYWNT 121 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MATNDRGMKN SGGKNGGGNR QVVKKGPWTT TEDTILMEYV RKHGEGNWNA VQRNSGLMRC 60 GKSCRLRWAN HLRPNLKKGA FSPEEERIII ELHAKIGNKW ARMAAQLPGR TDNEIKNYWN 120 TRLKRRQRAN LPIYPQELQS QNQPEHNQAQ QSLISSAFDP QRTTYNNPPS LSLLGILNPS 180 SMRPPITHQF PLNGNKNFRN PPKGLSMTPP SSMQNSQFSS LPVSVSNNNF GHDLFNSTPM 240 PSFQQTYPDF SSTMRPFLGN IPSNQNGLMF DMGINSINYP SGQLSMPVTT SSSSENTSSG 300 FGSSDANNYT NVGGLSRGNS GLLEDLLEES QTLTRAMKIE ERGKSLWENY GLVEKELGDH 360 QDGAIFTEES VYSFAHGDDV TLYNNSESSS SNPNASPGTI FKKEGSLKGT NQVDEDLMCL 420 LDSFPLGVSV PDWNDHNSKI ASDDYKAENL TEDSINSQVI ITTNSGSKKH ELGLEGCCWY 480 NMPSFC

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MATNDRGMKN SGGKNGGGNR QVVKKGPWTT TEDTILMEYV RKHGEGNWNA VQRNSGLMRC  60
GKSCRLRWAN HLRPNLKKGA FSPEEERIII ELHAKIGNKW ARMAAQLPGR TDNEIKNYWN  120
TRLKRRQRAN LPIYPQELQS QNQPEHNQAQ QSLISSAFDP QRTTYNNPPS LSLLGILNPS  180
SMRPPITHQF PLNGNKNFRN PPKGLSMTPP SSMQNSQFSS LPVSVSNNNF GHDLFNSTPM  240
PSFQQTYPDF SSTMRPFLGN IPSNQNGLMF DMGINSINYP SGQLSMPVTT SSSSENTSSG  300
FGSSDANNYT NVGGLSRGNS GLLEDLLEES QTLTRAMKIE ERGKSLWENY GLVEKELGDH  360
QDGAIFTEES VYSFAHGDDV TLYNNSESSS SNPNASPGTI FKKEGSLKGT NQVDEDLMCL  420
LDSFPLGVSV PDWNDHNSKI ASDDYKAENL TEDSINSQVI ITTNSGSKKH ELGLEGCCWY  480
NMPSFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	18	GGKNGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	6e-74	MYB family protein