PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99250.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 538aa MW: 58249.1 Da PI: 8.7609

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H PHT99250.1 6 FVCEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	15.2	6.2e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ PHT99250.1 82 YKCEKCSKKYAVQSDWKAHTKTC 104 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK ECKRKVYLCP EPSCVHHEPS 60 RALGDLTGIK KHYSRKHGEK KYKCEKCSKK YAVQSDWKAH TKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQESARN PPSLSTIGSH LYGNNMSLGG GGSLAKFNSQ MPDHQDMLHF 180 GSSNNSNKTI TSGGSHHIHH HNHQFDHNNN NLMGPSSAFR PSTAFFQLPA DQTSHQDYAG 240 GNKHHPSSSS IQGLMQLPDL HNNANVVAPS SSSMFNLNFF QNNNSNNNNN NNNNNNNNVV 300 VDNDNNNISG GLGGLLLPSP HQFSNNNSGE GSNNSSNIFS PSTLLGHNMS SSLPSLYVSS 360 SIPAPPMSAT ALLQKAAQMG STTSCNNSST SASLLKVFGS APGAGAGVGL GGSSSSGTKS 420 DLHPPPPVNF AGVYGHEDPM NTGNHLHDLV VNAYGAQEQH QEYGGVIGGG YNNNKMNSYN 480 EQPPQKKQMI NNNNFSMEIG MSEEANRLTR DFLGVGEIVR SMNGGGSNNN PFGGGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK ECKRKVYLCP EPSCVHHEPS  60
RALGDLTGIK KHYSRKHGEK KYKCEKCSKK YAVQSDWKAH TKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARN PPSLSTIGSH LYGNNMSLGG GGSLAKFNSQ MPDHQDMLHF  180
GSSNNSNKTI TSGGSHHIHH HNHQFDHNNN NLMGPSSAFR PSTAFFQLPA DQTSHQDYAG  240
GNKHHPSSSS IQGLMQLPDL HNNANVVAPS SSSMFNLNFF QNNNSNNNNN NNNNNNNNVV  300
VDNDNNNISG GLGGLLLPSP HQFSNNNSGE GSNNSSNIFS PSTLLGHNMS SSLPSLYVSS  360
SIPAPPMSAT ALLQKAAQMG STTSCNNSST SASLLKVFGS APGAGAGVGL GGSSSSGTKS  420
DLHPPPPVNF AGVYGHEDPM NTGNHLHDLV VNAYGAQEQH QEYGGVIGGG YNNNKMNSYN  480
EQPPQKKQMI NNNNFSMEIG MSEEANRLTR DFLGVGEIVR SMNGGGSNNN PFGGGNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	7e-87	C2H2 family protein